KEGG   Bathycoccus prasinos: Bathy16g00870
Entry
Bathy16g00870     CDS       T03089                                 
Name
(RefSeq) CCR4-NOT transcription complex, subunit 3
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
bpg  Bathycoccus prasinos
Pathway
bpg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bathy16g00870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpg03019]
    Bathy16g00870
Messenger RNA biogenesis [BR:bpg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Bathy16g00870
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     Bathy16g00870
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DDHD HicB
Other DBs
NCBI-GeneID: 19011153
NCBI-ProteinID: XP_007508717
UniProt: K8EQW6
Position
16:complement(join(182672..184573,184940..185071))
AA seq 677 aa
MATIRKLQAEIDKTFRKVDEQQEVFQQIFDRLKECDSSLKEKYEADLKKELKKLQKFRDQ
IKNWSADTAIKDKTSLNEYKRKIEIDMERFKMVERQSKTKAFSKHGLEKMENETPEQKRR
RETKEWLSTVVEELSNQSDAFEAEIEVLQLEAAKPSKRKGKNTNNGNEEKVNRLEESVQR
HKAHTLNLEIMMRLVENETLPAEEADDVRDLIEDYLERNQEDFDEFDVVDDMYESLNLEE
LATKESVKVVTNVKQLHEESGQDASSGSPQQLQTALSGGSSKIEPPKPRVVPPAPVLSPK
AAAAAAAQQEQQSVNQWGSRFPAPKGLDADGVGSGNGGNNAAVGSGSAAAAGKPIPRPNN
NSNAPPGPGGIKDGNAAQQAFPPGPRPLSSDANQQQSVAEAANAAFTANEVFDNPSQGAR
SLNEMSTSMRRGLSGSGMQSGSGSAQSINNASNNSINSTLALQQQQQQQQQQQQQQQQQQ
QQQQQRQQQQQQQQQQQRGGGGASAASTATVAHGDPSSRLRLLEASASSRLLPSASDGVW
TRRVRRAPQAPIPPSYPTTLLDGNGNNLYPVLENPALFERLDADALFFSFYHQQGTPQQY
LAARELKRANWRFHKKYSAWFARREEPKVSNEEFEQGAYVYFDHAVSRDEYGSVRGWCQR
SKPDFLFEYSHLENELQ
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggcgacgatacgtaagctccaggctgaaatcgacaagacctttcgtaaggtggacgag
cagcaggaggtgtttcagcaaattttcgatcggttgaaggagtgcgattcgagtttgaag
gagaaatacgaggcggacttgaagaaagagctgaaaaaactgcaaaaattccgggaccag
atcaaaaactggtccgcggataccgcgattaaagacaagacgtctttgaacgaatacaag
cggaaaattgaaatcgacatggagaggtttaaaatggtcgaaaggcaatcgaagacgaaa
gcgtttagtaaacacggattggagaagatggaaaacgaaactccggaacaaaagaggaga
agagagacgaaggagtggttgtccacggtggtggaggagttgtcgaatcagtcggacgcg
ttcgaggcggagattgaggtgttgcagttggaagccgcgaaaccgagtaaaaggaaaggg
aagaatacgaacaacgggaacgaagagaaagtgaacagattggaagagtcggtgcaaaga
cacaaggcgcacacgctgaatttggaaatcatgatgcgattggtggagaacgagacgttg
ccggcggaagaggcggacgacgtgcgggatttgatagaagattatttggagaggaatcaa
gaagatttcgacgagtttgacgtcgtggacgatatgtacgagagtttaaatttggaagag
ttggcgacgaaagaaagcgtgaaagtggtgacgaacgtgaagcagttacacgaggagtcc
ggacaagacgcctcgtccggatcgccgcagcagttgcaaacagccttgagcggaggatcg
tcgaagattgaaccgccaaagccgagagtggtaccgccggcgccggtgttgagtccgaaa
gccgcggccgcggcagctgcgcaacaggaacaacaaagcgtcaatcagtggggatctcgg
tttcccgcgccgaaaggtttggacgccgacggcgtggggtctgggaacggcgggaataac
gccgcagtcgggagcggttccgccgccgccgccgggaaacccataccgagaccgaataac
aattccaacgcgccaccgggaccgggaggtatcaaagacggcaacgccgcgcaacaagcg
tttccacctggaccgagaccgttatcatccgacgcaaatcaacaacaatccgtcgcggaa
gccgccaacgcggcgtttactgcgaacgaggtcttcgacaacccgagtcaaggcgcgcga
tcgttgaatgaaatgtccacgtccatgcgacgaggattatctggaagcggcatgcaatcc
ggatccggtagcgcccaatccataaacaacgcgagcaataatagcatcaactccaccttg
gcgctacaacaacaacagcagcaacaacaacagcagcagcagcaacaacaacaacaacag
caacaacaacaacaacggcagcagcagcaacaacaacagcagcaacaacaaagaggagga
ggaggggcgagcgccgcctccacggctaccgtcgcgcacggcgacccgtcctcgcgtctc
cgtctcctcgaagcttctgcctcctctagacttctcccgtccgcctcggacggcgtctgg
accagacgcgttcgccgcgcgccccaagcgccgattccgccttcctacccgaccactctc
ctcgacggcaacgggaacaatttatacccagttttggaaaacccggctttattcgaacgc
ttagacgccgacgcgctcttcttctccttctaccaccaacaaggcacccctcaacagtac
ttagccgctcgagagttgaaacgcgccaactggcggttccacaaaaaatacagcgcctgg
ttcgctcgacgagaggaaccgaaagtctccaatgaagaattcgagcaaggcgcgtacgtc
tacttcgaccacgccgtaagccgggacgaatacggaagcgtccgagggtggtgtcagcga
agcaaaccggactttctgttcgaatactcgcatctggagaacgagttacaatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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