KEGG   Paraburkholderia phymatum: Bphy_2846
Entry
Bphy_2846         CDS       T00704                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
bph  Paraburkholderia phymatum
Pathway
bph03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bph00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bphy_2846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bph03019]
    Bphy_2846
   03400 DNA repair and recombination proteins [BR:bph03400]
    Bphy_2846
Enzymes [BR:bph01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Bphy_2846
Messenger RNA biogenesis [BR:bph03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Bphy_2846
DNA repair and recombination proteins [BR:bph03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Bphy_2846
SSDB
Motif
Pfam: RQC HRDC DEAD RecQ_Zn_bind Helicase_C ResIII
Other DBs
NCBI-ProteinID: ACC72018
UniProt: B2JIH2
Position
1:complement(3186259..3188106)
AA seq 615 aa
MSRPLQILNEVFGYPAFRGQQGEIVEHVSAGGDCLVLMPTGGGKSLCYQIPSLVRREAGL
GAGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPER
LMTPRFLDLLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPSVPRIALTATAD
AITRDEIIHRLALDAARVFVSSFDRPNIRYRIVEKDNARSQLLDFIRAEHSRADGTTDAG
VVYCLSRRKVEETADWLKTQGVRALPYHAGMEFEVRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMTYGLGDVVQQRKMIDESEADD
AHKRVQTGKLDALLGLCETASCRRVRLLAYFGEEGKPCGNCDTCLEPPASWDATRESQMA
LSCVFRAQRASGIHFGAGHLIDILRGNRTEKILQRGHEKLSTFGIGAALSEHEWRAVFRQ
LVAFGFLTVDHEGFGSLVLTEISKSVLKGEQTVTMRRYVKPVRTRQSSGRTSERADPTAG
MNARERARWDRLRTWRTETAKSDGVPAYVIFHDATLAEIARNCPESLDDLRHIPGMGARK
LDRFGDELLEVVAAD
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgtcccgtccgctccagatcctcaacgaagttttcggttatcccgcgtttcgagggcag
caaggcgaaatcgtcgaacatgtttcggcgggcggcgactgtctggtgctgatgccgacg
ggcggcggcaagtcgctgtgttatcagattccatctctggtgaggcgtgaggcggggttg
ggggcgggcatcgtcgtgtcgccgctgatcgcactgatgcaggatcaggtggcggcgctg
acggaagttggcgtccgcgcggcgtacctgaattcgaccctgtcgggcgccgaagccgct
gcgacggaacgtgcactgcgcgagggcgaaatcgatttgctgtatgtggcgccagagcgt
ctgatgacgccgcgctttctcgatctgctcgagcgcacgcgcatcggcctgttcgcgatc
gacgaagcacattgcgtgtcgcaatgggggcacgatttccgccccgaatacattcagctt
tccgtcctgcacgaacgttttccatcggtgccgcgcatcgcgctcaccgcgaccgccgac
gcgattacgcgcgacgaaatcattcacaggctcgcactcgacgccgcgcgtgtgtttgtg
tcgagcttcgaccggccgaacatccgctatcggatcgtcgaaaaggacaatgcacgctcg
caactgctcgacttcatccgcgcggaacactcgcgtgcagacggcacgaccgacgcaggc
gtcgtgtattgcctgtcgcgccgcaaggtcgaagagacggctgactggttgaagacgcag
ggcgtgcgtgcgctgccgtatcacgcgggaatggaattcgaggtgcgtcaaaagcaccag
gaaatgttccagcgcgaagaaggcatcgtgatgtgcgcgacgattgcgttcggcatgggc
atcgacaaaccggacgtgcgtttcgtcgcgcaccttgacttgccgaagagcgtcgaaggc
tattaccaggagaccggtcgcgcaggccgcgatggtttacctgcaaacgcgtggatgact
tacggactcggcgacgtcgtgcagcagcgcaagatgatcgacgaatccgaagccgacgac
gcgcacaagcgcgtgcaaacgggcaagctcgatgcgttgctcggcctgtgcgaaacggct
tcgtgccggcgcgtgcggctgctcgcctacttcggcgaagaaggcaagccgtgcggcaac
tgcgatacgtgcctcgagccgccagcgtcgtgggacgcgacgcgcgaatcgcaaatggcg
ctctcgtgcgtattccgcgcgcagcgcgcgagcggaatccactttggcgcaggacacctg
atcgacattctccgcggcaatcgcaccgagaagattctgcagcgcggtcacgagaagctg
agtacgtttggaattggcgcggctttgtccgagcatgaatggcgcgcagtgtttcgccag
ttggtggcattcggatttctcaccgtcgatcacgagggattcggctcgcttgtgctgaca
gaaattagcaagtcggtcctgaagggcgaacagaccgtgaccatgcgccgttacgtgaag
cctgtgcggacgcgacagtcgtccggtcgcaccagcgagcgcgccgacccgacggctggc
atgaacgcgcgcgagcgcgctcggtgggatcggctgcgcacatggcgcaccgagacggcg
aaaagcgatggcgtcccggcctacgtcatcttccacgacgcgaccttggcggaaattgcg
cggaattgccctgaatcgctcgacgatctgcggcacattcccggcatgggcgcgcgtaag
ctcgaccgtttcggcgacgaactgcttgaagtcgtcgccgcggattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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