KEGG   Brachyspira pilosicoli 95/1000: BP951000_0780
Entry
BP951000_0780     CDS       T01278                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bpo  Brachyspira pilosicoli 95/1000
Pathway
bpo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bpo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BP951000_0780 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpo03400]
    BP951000_0780 (mfd)
Enzymes [BR:bpo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BP951000_0780 (mfd)
DNA repair and recombination proteins [BR:bpo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BP951000_0780 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter Helicase_C TRCF CarD_TRCF_RID RecG_dom3_C Fer4_20
Other DBs
NCBI-ProteinID: ADK30778
UniProt: D8ICA5
Position
866844..870434
AA seq 1196 aa
MENTEISNLLIEKFINSEEYKSFDLNTVKNIYGIKGGGDSLFFAALFKDKNKSLMIIKDD
ENEAMLLSQALNFYNIENYYFPDYDSVPFTKMSPITDIVQDRLSILYKLINEDKFILITT
IKAISRKLPNKETLKNNTINIKVNDKLNIDSLRLNLYDLGYVIEREVSEVGTCAVRGSII
DIYSILYNNPIRIELFDDEVESIRFFDIEDGKSYKNVEEITIYPVREAIYKDSLVEEFLN
NDSELKDDIQKSKYFAGSENLLGVFNKDLQTIFDYTNENIIFTDDILKLKNKLINVLSTT
EENFNDIDNIFKSFYDNINSLYIDTNYFEEIAKNTINLSPFIVDNNIHKFSFEEGVSFKS
KLTEFLDYIKDYRKKDYFIILSTSHYDQAKRFYKIMDNLEPKLIASEENDNNEESKIAEE
NNIIDSEEKLDFSNNKNNFYIITTQSASGFIKDDIKTIFIADWEVFGRKRKRVKKIPKVN
KNIIETFVDLNIGDYAVHVNYGIGKYLGLTRKLSNGKEKDYLTLEYAKGDKLYIPVEQMN
FVQKYISGSGEEPKLTALGGSAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDT
QWQDDFEASFNYEETVDQLRAINDIKSDMESDKMMDRLVCGDVGFGKTEVAFRAIFKAVM
AGKQCAILCPTTILSQQHYNNAKKRFEDFPVRIEVLNRFISSRQAKKNKEMLANGSCDII
IGTHMLLSDDIKFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMAL
TGIRDISIIETPPLNRIPVKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFAL
MIKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDS
ANKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAM
RDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEATNEYKGEIKEVTFDTVIDFKHNLFI
PDEYISDPKEKISVYKLIMRSQSDEDIDTAKEYMIDKYGKMPKEMEDIFSIAKLKVILKR
VRVLSVIEGHYNMYIKLDKYSKIDAKKVSKLVSLEGSGVYFDKENLNQLIIPVVDDSLIW
KINKVSEVILEIESEEENKDKSKEKSLADANIESQRKNKQNNIRKRKIIKINKREN
NT seq 3591 nt   +upstreamnt  +downstreamnt
atggaaaatactgaaatatcaaatctcttaatagaaaaatttataaacagcgaagaatat
aaatcttttgatttaaacactgtaaaaaatatatatggcataaaaggcggaggagattct
cttttttttgctgctctttttaaagataaaaataaaagtttaatgattataaaagacgat
gaaaatgaagctatgctattaagtcaggctttaaacttttataatattgagaattattat
tttccagattatgacagtgtaccttttactaaaatgtctcctattacagatatagtgcaa
gacagattaagtattttatataaactaattaatgaagataaatttattttaataacaaca
ataaaagctatttcaagaaaacttccaaacaaagaaacattaaaaaataatacaattaat
ataaaagttaatgataaattaaatattgattctttgaggctcaatttatatgatttagga
tatgtgatagagagagaagtttctgaggttggaacttgtgctgttaggggcagtataata
gatatatattctattctttataataatcctattagaatagagttgtttgatgatgaagtt
gaaagtataagattttttgatatagaagatggaaagtcatataaaaacgttgaagagatt
acaatatatcctgtaagagaagctatttacaaagattcacttgtagaagagtttttaaat
aatgatagtgagttaaaagatgatatacaaaaaagtaaatattttgctggaagtgaaaac
ttacttggagtatttaataaagatttacaaacaatatttgattatactaatgaaaatatt
atatttacagatgatatattaaaactaaaaaataaacttataaatgttttatcaacgaca
gaagagaattttaatgatatagacaatatatttaaatctttttatgataatataaactct
ctttatatagatacaaattattttgaagagatagcaaaaaatacaattaatttaagccct
tttatagtggataataatattcataaatttagttttgaagaaggagtttcttttaaatca
aaactaacagagtttttggattatattaaagattatagaaagaaagattattttattata
ctctctacaagccattatgaccaggcaaaaagattctataaaataatggataatttagag
ccaaaattaattgcatcagaagaaaatgataataatgaagagagtaaaatagcagaagaa
aataatataatagatagcgaagaaaagcttgatttctctaataataaaaataacttctat
ataataacaactcaatctgcatcaggatttattaaagatgatataaaaacaatatttata
gcagactgggaagtatttggaagaaaaagaaaaagagtaaaaaagatacctaaagtaaat
aaaaatataatagaaacatttgttgatttgaatataggcgactatgctgttcatgtaaac
tatggtataggtaaatatttaggattaacccgcaaattatcaaacggaaaagaaaaagac
tatctaacattagagtatgccaaaggagataaactctatataccagtagaacagatgaac
tttgtgcagaaatatatatctggaagcggagaagagccaaaattaacagcattaggcgga
agtgcttgggataaaataaaaagtaaggcaagagaagatgctttagctacagcaagagac
cttataaaaatatatgcaattcgctctaatgtgcatggaaatatttatggaccagacact
caatggcaagatgacttcgaagcttcatttaactatgaggaaactgttgatcaattaaga
gctatcaatgatataaagtcagacatggaaagcgacaagatgatggacaggcttgtttgc
ggagatgtaggatttggaaagactgaggttgcttttagagctatatttaaagctgttatg
gctggtaaacaatgtgcaatactctgccctactacaatactctctcaacagcactataat
aatgccaaaaaaagatttgaagatttccctgttcgtatagaagtattaaatagatttatc
tcatcaagacaggctaagaaaaataaagaaatgttagcaaatggttcttgcgatatcatc
ataggtacgcatatgcttttatctgatgatattaagtttaaaaacttaggtttaatagtg
atagatgaagagcagagatttggtgtaaaacataaagaagcattaaaaaaacttagattt
gaaactgatgtgcttacactatctgcaacaccaataccaagaacattaaatatggcatta
acaggcataagagatataagcataatagaaacgcctccattaaacagaatacctgtaaaa
acttatgtaatggagtttaacgaaaagactgttgtaaatgcaatagagagagaattaaaa
agaaacggccaagtattttatttgtataacagaatagatactatagaatcatttgctttg
atgataaaaaaactatgcccaaaagcttcaatatgtgtagcacatggaagaatgacaggt
attcagttagagaaaattatgtcggattttattaatcataaatatgacatattagtatct
acaacaataatagaaaatggaattgatatacctaatgcaaacactatattaatagatagt
gctaataaactaggtctttctgaactttatcaattaagaggaagagttggaaggagcgac
agagaggcttatgcttatatgttttatcctgaaaacttagcattaacagaagtagcttat
aaaagacttcaagccatatcagaacatacagatttaggtgctggttttaagatagcaatg
agggacttggaaataagaggagctggcaatatattaggaaaagaacaatctggtatgatt
tatcaagttggttatgagctttatactcaaatgcttgaagaggctaccaatgaatataag
ggtgaaataaaagaagttacttttgatacggttatagattttaaacataatttgtttata
ccagatgaatatatatcagacccaaaagagaaaatatcagtatataaattaataatgcgt
tctcaaagtgatgaagacattgacactgccaaagaatatatgatagataaatatggaaaa
atgcctaaagaaatggaagatatatttagtatagcaaaattgaaagtgatactaaaaaga
gtgagagtattatcagtgatagaaggacattataatatgtatataaaacttgataaatac
tctaaaatagatgctaagaaagtttcaaaattagtttctttagaaggttctggagtttat
tttgataaagagaatctcaatcaattaataataccagtagtagatgatagtttaatttgg
aaaataaataaggtaagtgaagtaatattagaaatagaaagcgaagaagaaaataaagac
aaaagcaaagaaaaaagtttggcagatgctaatatagaatcccaaagaaaaaataagcaa
aataatataagaaaaagaaaaataataaaaattaataaaagagagaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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