KEGG   Bifidobacterium pseudocatenulatum: BBPC_0169
Entry
BBPC_0169         CDS       T03932                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
bpsc  Bifidobacterium pseudocatenulatum
Brite
KEGG Orthology (KO) [BR:bpsc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpsc03032]
    BBPC_0169
   03400 DNA repair and recombination proteins [BR:bpsc03400]
    BBPC_0169
Enzymes [BR:bpsc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BBPC_0169
DNA replication proteins [BR:bpsc03032]
 Prokaryotic type
  DNA Topoisomerases
   BBPC_0169
DNA repair and recombination proteins [BR:bpsc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BBPC_0169
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 SBP_bac_3 Toprim_2 DUF6429
Other DBs
NCBI-ProteinID: BAR02847
UniProt: C0BR25
Position
228393..231449
AA seq 1018 aa
MATGSKLVIVESPTKAKKIGGYLGSEYTVMASVGHIRDLAQPSQVPAADKTKFGKFGVDV
EDGFKPYYIVDGNKKKTVSELKSALKKADTLYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITKEAIKASLDNTRDVDDDMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRAPYWDVTATLEAPDADGNNVAFDSRMVSLGGRRLAGSKDF
GADGKLTAAGAKDQVVQLDEAQASAIAQALEFATFTVASMETKPYRRRPVPPFTTSTLQQ
TAGNRLGMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAAREAVVKHFGENYLSDA
PKQYATKTAGAQEAHECIRPAGAKFRDPAEIASKVPADQLKLYTLIWQRTLACQMADATG
STATVRLSASTESNGEAMFQASGTVIEFPGFMKATGEGRRAFAESKKGDVAGSVEQAAQS
GKSSKADKKSDDNVSLPPMNPGDALAAVAVGADGHETQPPARYTEASLVKTLEQKEIGRP
STYASIISTIIDRGYVYERGRALIPSWLAFSVVKLLETKFPRYVDYEFTADMESGLDQIA
SGQETGRNWLTRFYFGSGEGAAQSADEAHAGLQQQVAQLGEIDAREINTIEIGDGLHVRV
GRYGPYLEDMNHLDDEGNPKRASLPDTLAPDELTVEVGHDLIENHSGGPRALGVDPVSGG
TVEVRNGRFGPYVALVMPSSDAGADGDVAGGGKSKKGKSAKKAADRPKMASLFKTMSPES
LTLDDALRLLSLPREIGSYEEVDAQTGEVQTVTVQANNGRYGPYLTKTGADGKSDTRSLA
SEDEIFTVDLDKAKELFAQPKYGRGRGRGAAKPPLRELGVDPETQKQVTIKEGFYGAYIT
DGETNRTLPKQYAPESIEPAEAFRLLAEKRAQGPSKRRGRKGAAGKGGAKKTAAKGAKAS
ADQVRADRRAKVRELADKGWANTRIAKEIGSTPTTVKADVEWLAVNEGYTRPAVVPAR
NT seq 3057 nt   +upstreamnt  +downstreamnt
atggctaccggcagcaagctcgtgattgtggagtctcccaccaaggccaagaaaatcggt
gggtatttgggctccgaatatacggtgatggcctcggtcggccatattcgagatcttgcg
cagccgagccaggtgccggccgccgacaaaaccaaattcggcaagttcggcgttgacgtg
gaagacggattcaagccgtattacatcgtcgacggcaacaagaagaaaaccgtgtccgag
ctgaaaagcgcgttgaaaaaagccgacaccctgtacctcgcaaccgatgaggatcgcgag
ggagaggccatcgcctggcatctggtacagacactcaagccgaaagtgccggttaagcgc
atggtgttccacgaaatcacgaaggaagccatcaaagcgtcgcttgacaatactcgcgac
gttgacgacgacatggtcgacgcccaggaaacccgccgtattctggaccgcctgtacggc
tatgagctttctccggtgctgtggcgcaaggttgggccgggtctttccgcgggccgtgtg
cagtccgtcgccacgcgtttgatcgtggagcgcgagcgcgagcgtatggcgttcgtgcgt
gccccgtattgggatgtcaccgcaacgttggaggcgccggatgccgatggcaataatgtt
gcgttcgattctcgtatggtgtcgttgggtggccgtcgtttggctggttccaaggatttc
ggcgccgatggcaagctgactgcggccggtgcgaaggatcaggtcgtgcagttggacgag
gcgcaggcttccgcgattgctcaggcattggaatttgcaacgtttactgtcgcgtcgatg
gaaaccaagccgtaccgtcgccgtccggttccaccgtttaccacgtccaccttgcagcag
accgccggcaatcgtctcggcatgagctcgcgtcagaccatgcgtgcggcgcaaggattg
tacgaaaacggctatatcacctacatgcgtaccgattcggtgacgctgtcgcaagaggcg
atcgcagccgcacgcgaagcggtcgtcaagcatttcggcgaaaactatctgtcggacgcg
ccgaaacaatatgccacaaagacggcaggcgcgcaggaagcccacgaatgcatcaggccg
gcgggcgcgaaattccgtgaccctgcggaaatcgcaagcaaagtgccggccgaccagctc
aaactgtacacgctgatctggcagcgcacgcttgcctgccagatggcagacgcaaccggt
tccacggcgaccgtgcgactgtccgcgtcgaccgaatcgaatggggaagccatgttccag
gcttccggcaccgttatcgagttccccggctttatgaaggcgaccggtgagggccgccga
gcgttcgccgaatcgaagaagggtgatgttgctggaagcgttgaacaggccgcgcaatcc
ggcaaatccagcaaagcggataagaagtcggatgacaatgtgtcgctgccgccgatgaat
ccgggcgatgcgctcgctgcggtggcggttggtgccgacggacacgaaactcagcctccg
gcgcgttacactgaagcgtcgcttgtgaaaacgttggaacagaaggaaatcggccgcccg
tccacgtatgcgagcattatttccacgattatcgatcgcgggtacgtgtatgagcgcggt
cgtgcgttgattccgtcgtggctcgcgttctccgtggtcaaattgctggaaacaaagttc
ccgcggtatgtggattatgagttcactgccgatatggaaagcggtcttgaccagatcgcg
agcggtcaggagaccggcaggaattggctgacccgcttctatttcggttccggtgagggt
gccgcgcagtctgcagacgaggcacatgccggcttgcagcagcaggtcgcgcagttgggt
gaaatcgacgctcgcgagatcaatacgatcgagatcggcgacggtttgcatgtgcgcgtc
ggtcgatatggcccgtatttggaggatatgaaccatctggatgatgagggcaatccgaag
cgtgcctcgctgccggatacgctcgctccggatgagctgacggtggaagtcggtcatgat
ttgatcgagaaccattccggcggtccgcgcgctcttggcgtcgatccggtttccggaggc
accgttgaagtgcgtaatggtcgtttcgggccgtatgttgcgctggtgatgccttcttcg
gatgctggtgctgacggtgacgtggctggtggtggcaagtcgaagaagggcaagagcgct
aagaaggctgccgatcgcccgaagatggcgtcgttgttcaagacgatgagtccggaatcg
ttgacgttggatgatgcgttgcgtctgctgagcttgccgcgtgaaatcggttcgtatgaa
gaggtggatgcgcagaccggtgaagtgcagacggttaccgtgcaggccaataatggtcgt
tacggtccgtatttgacgaagactggtgccgatggcaagtcggatacgcgttcgctcgct
tcggaagatgagattttcacggttgatttggataaggcgaaggaactgttcgcccagccg
aagtatggccgtgggcgcggtcgtggcgctgccaagccaccgctgcgtgaactgggcgtc
gatccggaaacgcaaaagcaggtgaccatcaaggaaggcttctacggcgcgtatatcacc
gatggtgaaacgaaccgtacgttgccgaagcagtatgctcccgagtcgatcgagccggct
gaggcgttccgtctgctggcggagaagcgtgcgcagggtccgtcgaagaggcgtggacgc
aagggtgctgctggcaagggtggtgctaagaagactgctgctaagggtgctaaggcttct
gctgatcaagttcgtgccgatcgccgtgccaaggtgcgcgagttggccgataagggttgg
gccaacacccgtatcgccaaggagatcggttccacgccgaccacggtgaaggccgatgtg
gaatggctcgctgtcaacgaaggctacacccgtcccgccgtagttcccgcccggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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