KEGG   Basilea psittacipulmonis: IX83_08065
Entry
IX83_08065        CDS       T03226                                 
Name
(GenBank) hypothetical protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bpsi  Basilea psittacipulmonis
Pathway
bpsi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpsi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IX83_08065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpsi03019]
    IX83_08065
   03009 Ribosome biogenesis [BR:bpsi03009]
    IX83_08065
Enzymes [BR:bpsi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     IX83_08065
Messenger RNA biogenesis [BR:bpsi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     IX83_08065
Ribosome biogenesis [BR:bpsi03009]
 Prokaryotic type
  rRNA processing factors
   IX83_08065
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 TcdA_TcdB
Other DBs
NCBI-ProteinID: AIL33257
UniProt: A0A077DIG2
Position
complement(1818927..1821743)
AA seq 938 aa
MKRMLFNATHQEELRVAIVDGQKLIDLDIETSGREQRKGNIYKGVVTRIEPSLEACFVNY
GHDRHGFLPFKEISRSYFKEGVDVRSARIQDAIVEGQELIIQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEERAELRQAMDQLDLPAGMSMIARTAGIGRTVEELQ
WDLRYLLQLWTAIDNAAKQYPAPILIYQESSLVIRAIRDYFSPDISEILIDTDEITSQVL
AFMKDVMPDNLSRVKRYYDEVPLFSRFQIEHQIETAYSRHVQLPSGGSIVIDHTEALVAV
DVNSARSTRGGDIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMLEARNQRAIEQC
LRDALRVDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCTGTGVIRDVESSALN
VLRLLQEEAMKENTAAIHAQVPVEVATFLVNEKRMDLVKMESRYQTQIVLLPNKYLETPH
HIIERLRYDDSRLDEPTITPNMVPQPDTHVKWEGAEPKQLVKTEAIIKQVNHDQPPPQIS
DKERAKLKKANKPGLLARFWAWVTGSQAKKTSKKRVKNQQSNRNGAKKNVNTRKRQQRRS
EEKPVQLSPQEIAETAKKADPRRNRNAKPKQNNKSVPAEKPSEPTELKVSQEPMESLLDE
KTPPVSSEVATERKTERRANNMRRNRRRNNRKEEAGAAMNILSNDELHAIQHYVDEHQNQ
EPIVIDLSADDTWEPKVKKDKKSKFKPQEEALTHQDTEQVASESPADRSVATEIVVDESS
AQAEPVAVNEPPVEPVAVNESPVEPVEPVVMPESPVQTETVLVDEPVTSPDKVLEPQEQV
VSEDSEKLTVSQAEVDVPVETVEPVRSQVSDAQPSSVSMETMRQTLSQTVAEVGLEWVET
NPELVKEVVLPTPTFGRPRPPAVVISKEPLIQVETKKS
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgaaacgtatgttgtttaacgcaacccatcaagaagagttgcgtgttgcgattgtagat
ggccagaaactgattgatcttgatattgagacatcaggacgagaacaacgaaaaggtaat
atctacaaaggtgtggtcaccagaattgaaccaagtttagaagcctgttttgtgaattat
ggtcatgatcgtcatggctttttaccgttcaaagaaatttctagaagttattttaaagag
ggtgttgatgttcgatctgctcgtatccaagatgcgattgtagagggacaggaactgatt
atccaagtagagaaagaagaacgtggcaataaaggggctgcgttaacaacctttatttct
ttggcgggtcgctatcttgtgttaatgccaaataatcctcgcggaggcggtgtgtctcgc
cgtattgagggagaagagcgagcagaattgcgccaagcgatggaccagttggatttgcca
gcaggtatgagtatgattgctcgtacggcagggattggtcgtacggtagaagaattacaa
tgggatttgcgttatttgcttcagttgtggacggccatcgataatgccgcgaaacaatac
ccagcaccgattttgatttaccaagaatcaagcttagtgattcgtgcgatcagagattat
ttttcacctgatattagtgagattttgattgatacagatgagattacatctcaggtgttg
gcgttcatgaaagatgtgatgccagataatctctctagagtgaaacgttactatgatgaa
gtgcctttgttctccagattccagattgagcatcagatagaaacggcgtattctcgtcat
gtacagcttccttcaggtggatcgatcgtgattgatcataccgaagcgttggtggccgtt
gatgtgaactctgcccgttcaactcgaggtggtgatattgaagaaaccgctttgagaacg
aacttggaggcagctgaagaggtcgctagacagctaagattaagagacttgggtggtttg
atcgttatcgattttatcgatatgttggaagcacgtaaccaaagagcgattgaacagtgc
ctaagagatgccttgcgtgtggaccgtgcaagggttcaaatgggcaaaatctctcgtttt
ggtttgatggaattatcgcgtcaacgcctacgtccctcgttaagtgagggctcacatatt
acttgtcctcgttgtacaggtacaggggtgattcgcgatgtagaatctagtgctttgaat
gtcttgcgtttactgcaagaagaggcgatgaaagaaaatacggctgctattcacgctcaa
gtacctgtagaggtggctactttcttagtaaatgaaaaacgcatggatctggttaagatg
gaatcacgttatcagacccagatcgtgttgttgccgaataagtatttggaaacgcctcat
catatcattgaacgtttgcgttatgatgacagtcgattggatgaaccaacgattacgcct
aatatggtgccacagcctgacacccacgtaaaatgggaaggtgcagaacctaagcagtta
gtgaaaactgaggcgattattaagcaagtcaatcatgaccaacctcctcctcagatttct
gataaagaacgtgccaaattgaaaaaggctaataaaccaggtttattggctcgtttctgg
gcgtgggtgacaggttctcaagcgaagaaaacatctaaaaaacgtgtgaagaatcagcaa
tcgaatcgtaatggtgcgaaaaagaatgtgaacacacgtaaacgtcaacaacgtcgttct
gaagaaaagccagtgcaattatctcctcaagaaattgctgaaacggctaaaaaagcggat
cctagacgtaatcgtaatgcgaaacctaaacagaataacaaatctgttccagctgagaaa
ccatcggaaccaaccgaattaaaagtgtctcaagaaccgatggagtcgttgttggatgaa
aaaacgccacccgtttcatcagaagtggcgacagaacgaaaaacagaaagacgtgctaac
aatatgcgtcgcaacagacgtcgtaataaccgcaaggaagaggcgggtgcagcgatgaat
attttgagcaacgatgaattgcatgcgattcaacattacgtagatgaacatcagaatcaa
gaaccgatagtgattgatttgtcggccgatgatacttgggagccaaaggttaaaaaggac
aaaaagtctaaatttaagccccaagaggaagccttgactcatcaagatactgaacaggtg
gcatcagaatcgcctgcggaccgttcagtggccactgagatagtggttgatgaatcgtcg
gcacaggctgaacctgtagcggtgaatgaaccgccagtagaacctgtagcggtgaatgaa
tcgccagtagaacctgtggagcctgtggtgatgccagagtcgcctgtacagacggaaacg
gtcttggtagatgaacctgttacatcgccagacaaggtgcttgaaccacaggaacaggta
gtaagtgaggattcagaaaaactgacggtatctcaagctgaggtcgatgtgcctgtggaa
acagttgaacccgtaaggtctcaagtcagtgatgcccaaccttcttctgtgtcaatggaa
acaatgcgtcaaacgcttagccaaaccgttgcagaagtaggcttagagtgggtggagact
aatcctgaactggtaaaagaagttgtcttgccgacccctacgtttggtcgcccaagaccg
cctgctgtggtgatttctaaagaaccattgattcaggtagaaactaaaaaatcatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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