KEGG   Basilea psittacipulmonis: IX83_08665
Entry
IX83_08665        CDS       T03226                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bpsi  Basilea psittacipulmonis
Pathway
bpsi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bpsi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    IX83_08665 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bpsi03021]
    IX83_08665 (rpoB)
   03400 DNA repair and recombination proteins [BR:bpsi03400]
    IX83_08665 (rpoB)
Enzymes [BR:bpsi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     IX83_08665 (rpoB)
Transcription machinery [BR:bpsi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     IX83_08665 (rpoB)
DNA repair and recombination proteins [BR:bpsi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      IX83_08665 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 Peptidase_M23
Other DBs
NCBI-ProteinID: AIL33363
UniProt: A0A077DJU2
Position
complement(1940733..1944845)
AA seq 1370 aa
MQYSFTERKRIRKSFAKRENVQPLPYLLETQLESYRRFLQKDIPADKREDDGLQAAFNSI
FPIDSNNGAARLEFVSYHLTEPVFDVKECQLRGFTYASQLYAKVRLKIIDRDSSKASVKE
VKEQEVFMGEIPLMTDTGSFIINGTERVVVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKAIGMTPESILEHFYEFEEVTLNKTS
ATKQFVPERWKGEVLSFDLKDADGNVLIPKDKRITKKHLNDVAKAKISKIDLPDEYLIGR
VIAKDIVDTKTGEVLVKANAEITEEILTQLREAGVKKFETIYTNELDHGAYISQTLRTDE
VPDQMSARAAIYRLMRPGEPSTEEGLEDLLNRLFYSKETYDLDPVGRMKVNSRLGLNETS
LTLTNADILRTIEVLVDLRNGRGYVDDIDHLGNRRVRCVGELISNQFRSSLARIDRALKE
RLGQAESNNLMPQDLLNTKAISNSIREFFSSSQLSQFMDQTNPLSEITHKRRVSALGPGG
LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNKYGFLETPYRKVVDG
KTTNEVEYLSAIEESKYVIAQANAELDKNGRFINDRVACRKAGETFMASPSEIGYMDVAP
SQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGTPVV
ATRGGVVDFVDASRIVIRVNDDESRAGEVGVDIYNLIKYTRSNQSTNINQRPIVRPGDVV
ARGDVIADGASSDIGELALGQNMLIAFMPWNGYNFEDSILISEKVVAEDRYTSVHIEELS
VFARDTRLGKEEITRDISNLSETQLGRLDESGIIHIGAEVSAGDLLVGKVTPKGETTTLT
NEERLLREVLREKAYDVKDTSLTVPTGMSGTVIDVQVFTRKGVQRDKRAQSIIDDELRGY
RTDLDDQLRIVENDMFDRIARILEGKVANGGPGRLAKGTKITSAYLEGLENRWHWFDIRL
ADEEAANALESAKASIEQKRKEFDLAFEEKRKKLTQGDELPPGVLKMVKVYIAVKRRLQP
GDKMAGRHGNKGVVSRIVPVEDMPHLADGTPVDIVLNPLGVPSRMNVGQVLEVHLGWAAK
GVGQRIAEMLDEERKGQIKELRSFLDRVYNTTGIKTDFKQFDDDQLLAMANNLRNGVPFA
TPVFDGATEEEIQEMLKIAYPEEIREKLQLTPTRTQAYLIDGRTGERFERPVTIGYMHYL
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAKFGGQRFGEMEVWALEAYGASYTLQEMLTV
KSDDNVGRRNIYNNIVKGEHVLKAGTPESFNVLVREIRSLALDMDLERKE
NT seq 4113 nt   +upstreamnt  +downstreamnt
atgcaatactcatttactgaaagaaagcgtattcgtaaaagtttcgcaaaacgcgaaaat
gtacagccacttccttacttgcttgaaacacagctagagtcttatcgccgattcttgcag
aaagatattcctgcagacaagcgtgaagacgatggattgcaagcggcgtttaattcaata
ttcccaattgacagtaacaatggtgcagcacgccttgagtttgttagctatcatttgacc
gaacctgtgtttgacgtaaaagaatgtcagttgcgtggatttacttatgcctcacaactg
tatgccaaggttcgtttgaaaattatcgaccgtgattcgagcaaggcaagtgtcaaagaa
gtgaaagagcaagaagtcttcatgggagaaattcctttgatgacggatactggttctttc
atcattaacggtactgaacgtgttgtggtgtctcagttgcatcgttcgcctggtgtgttc
tttgaacatgaccgtggtaagacgcatagttcaggcaagttgcttttttcagctcgcgtg
attccttaccgtgggtcttggttggattttgagttcgatccaaaagatattttattcttc
cgtatcgatcgtcgtcgtaaaatgccagtgacgattttgcttaaagcaatcggcatgacc
cctgaaagtattctggagcatttctatgaatttgaagaagtgaccttgaataaaaccagt
gcgacgaagcagtttgtgcctgagcgttggaaaggcgaagtattaagctttgatttgaaa
gatgctgatggcaatgtccttattcccaaggataagcgtattactaagaaacatctgaat
gatgtcgcaaaagcaaaaatttctaaaatcgatttgcctgacgagtatttgattggtcgt
gtgattgcaaaagatattgttgacacgaaaacaggtgaagtgcttgtcaaagcaaatgct
gaaattacggaagagattttgacacagttgcgtgaagcaggtgtgaagaagtttgaaacg
atttataccaacgagcttgatcacggtgcttatatttctcagacattgcgtactgatgaa
gtgcctgatcaaatgagtgcacgtgcggcgatttatcgcttgatgcgtccgggcgagcct
tcaactgaagaagggttggaagatttattaaatcgtcttttctatagcaaagaaacttac
gatctagatccagtcggtcgtatgaaagtgaatagtcgtcttggtttgaacgagacttcg
ttgactttgacaaacgcggatattttaagaacgatcgaagtgttggttgatttgcgtaac
ggtcgtggttatgtggatgatattgatcacttgggtaaccgtcgtgttcgttgtgttggc
gagttgattagtaaccagttccgcagtagcctagcacgtattgatcgtgctttgaaagag
cgtttaggtcaggcagaaagcaataacttaatgcctcaggatctattgaataccaaagcg
atttctaactcgattagagaattctttagctcaagccagctttctcagttcatggaccaa
acaaacccattgtctgagattacccataaacgccgtgtttcggccttaggtcctggtggt
ttgacgcgtgaacgtgctggtttcgaagtgcgtgacgtacacccaacgcattatggtcgt
gtatgccctatcgaaacgcctgaaggtccaaacattggtttgattaactcaatggccttg
tatgcacgtttgaacaaatatggcttcttagaaacgccttatcgtaaagtcgtagatggc
aaaacaactaatgaagtagaatacttatcggctattgaagagtcaaaatacgtgatcgcc
caagcgaacgcggagttggataagaacggtcgttttatcaatgatcgcgtggcttgccgt
aaagcgggtgaaacgtttatggcctcaccaagcgagattgggtatatggacgtggcacca
tcacagatcgtgtcggtagcggcttctttgattcctttcttggaacacgatgatgcgaac
cgtgcattgatgggtgcaaacatgcaacgtcaggcagttccttgcttgcgtcctgagaaa
ccattggttggtacaggtattgaacgtacggtagcggttgactcaggtacacctgtggtc
gcgacgcgtggtggtgtggttgactttgttgatgcctcacgtatcgtgattcgtgtgaat
gatgatgaaagtcgtgccggtgaagtgggcgttgatatttacaatttgatcaaatacaca
cgttctaaccaaagcactaacattaaccagcgtccaatcgtgcgtcctggcgatgtcgtg
gcacgtggtgatgtgattgcagacggtgcgtcttcggatattggtgaattggcgttgggt
caaaatatgttgatcgcgttcatgccatggaacggttataacttcgaggactcgatctta
atttctgaaaaagtagtggcagaagaccgttatacgtctgttcatatcgaggaattaagc
gtatttgctcgtgatacacgtttgggcaaagaagaaattacacgcgatattagcaacttg
tctgaaacccaattaggtcgtttagatgagtcgggtattattcacatcggtgcagaagtt
agtgcaggcgacttgttggtgggtaaggtgacaccaaaaggcgaaaccactaccttaacg
aacgaagaacgtttgttgcgtgaggtgttgcgtgagaaagcttatgatgtaaaagatacg
tcattgactgtgccaacaggtatgtctggtacggttatcgatgttcaagtctttacgcgt
aaaggagtacagcgtgataaacgtgcccaatctatcattgatgatgaattgagaggctat
cgcacggatctagacgatcagttacgtatcgttgaaaatgacatgtttgaccgtattgct
cgtattttagagggcaaagtggcaaacggtggtccaggtcgtttggcaaaaggcacgaag
attacgtctgcttatcttgagggacttgaaaaccgttggcattggtttgatattcgttta
gcagatgaagaagcggcgaatgctttggaatcagcgaaagcgtctattgaacaaaaacgc
aaagagtttgatctggcttttgaagaaaaacgcaagaaattgactcaaggcgatgagttg
cctccaggcgtgttgaagatggtaaaagtgtatattgcggtgaaacgtcgtcttcaacct
ggtgataagatggcaggtcgtcacggtaacaaaggtgtggtgtcacgtatcgttccagta
gaagatatgccacacttggcagatggtacaccagtggatatcgtattgaacccattaggc
gtgccatcacgtatgaacgtgggtcaggtattggaagttcacttgggttgggcggctaaa
ggcgtaggacaacgtatcgccgaaatgcttgacgaagaacgtaaaggccaaatcaaagaa
ttacgtagtttcttagatcgcgtctataacacgacgggtatcaaaactgatttcaaacag
tttgatgatgatcagttattggcgatggcgaataatcttcgtaatggtgtaccttttgca
acaccagtatttgatggtgctaccgaagaagaaattcaggaaatgttgaagattgcttat
cctgaagaaattcgtgaaaaactacagttaacgccaacacgtactcaagcgtatttgatc
gatggtcgtacaggtgagcgttttgagcgtcctgtcacgattggatacatgcactatttg
aaacttcatcacttagtggatgataagatgcacgctcgttcaacaggtccatactcatta
gtgactcagcaaccactaggcggtaaagctaagtttggtggtcagcgtttcggtgagatg
gaggtttgggcacttgaggcttatggtgcatcgtacaccttacaggaaatgttgaccgtt
aagtctgatgacaatgtgggtcgtcgcaatatttacaacaatattgttaaaggtgagcat
gttctaaaagcaggtacgccagaatcctttaacgtattggtaagagagattcgttcattg
gcattagatatggatttggagcgtaaagaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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