KEGG   Burkholderia pseudomallei MSHR511: BBQ_2326
Entry
BBQ_2326          CDS       T03012                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
bpsm  Burkholderia pseudomallei MSHR511
Pathway
bpsm03030  DNA replication
bpsm03430  Mismatch repair
bpsm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bpsm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBQ_2326 (dnaE)
   03430 Mismatch repair
    BBQ_2326 (dnaE)
   03440 Homologous recombination
    BBQ_2326 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpsm03032]
    BBQ_2326 (dnaE)
   03400 DNA repair and recombination proteins [BR:bpsm03400]
    BBQ_2326 (dnaE)
Enzymes [BR:bpsm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BBQ_2326 (dnaE)
DNA replication proteins [BR:bpsm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BBQ_2326 (dnaE)
DNA repair and recombination proteins [BR:bpsm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BBQ_2326 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C RecG_wedge Nitr_red_assoc
Other DBs
NCBI-ProteinID: AHG34907
Position
1:complement(2668415..2671876)
AA seq 1153 aa
MRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDAGIKPIAGCDVWITNHDDRDKP
SRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASWLEGELAEGLLALSGAQQGDIG
LALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAEAYIQQAVTIAAELKLPVVATH
PLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQFFRTQGDMAALFADLPSALANT
VEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQEGLDKRLVQLYPDEAEREAQRG
KYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDL
DPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAK
AAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDL
AQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFL
GLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGM
LKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVY
QEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFD
LMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLV
NGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFAD
LFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQAGL
FDIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELK
EGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEVTVFNEQFDANRALFKEDELLIV
QGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTMNGNADAAALRRVLEAHVAKPDE
TPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYSNARAQGEMRLGDAWRVKPSDALLADL
RAAFGGSVVEIVY
NT seq 3462 nt   +upstreamnt  +downstreamnt
gtgcgtctcgacgatatcgtcaagtcggcggccgaagacggtcagggcgcgcttgcactg
accgacctcggcaacgcgttcggtctcgtccgtttctacaaggaagcccgcgatgcgggc
atcaagccgatcgccggctgcgatgtctggatcaccaaccacgacgatcgcgacaagccg
tcgcggctgctgctgctcgtcaaggacaagcgcggctacctgaacctctgcgagctgctg
tcgaaggcgtggctcacgaaccaataccgcggccgcgcggagctcgacgcgagctggctc
gaaggcgagctcgccgaagggctgctcgcgctgtcaggcgcgcagcagggcgacatcggc
ctcgcgctcgcggcgggcaacgaggcggccgcgcgccgccacgcgcagcgctgggcgcgg
gtgttcccgggcggtttctatatcgaattgcagcgctacggccagccgggcgcggaagcg
tacatccagcaggcggtgacgatcgcggcggagctgaagctgcccgtcgtcgcgacacat
ccgctgcagtacatgacggccgacgatttcaccgcgcacgaggcgcgcgtgtgcatctcg
gaaggcgacatcctcgcgaatccgcgccgccagaaacgcttcacgaccgagcagttcttc
cgcacgcagggcgacatggccgcgctgttcgccgatctgccctcggcgctcgcgaacacg
gtcgagatcgccaagcgctgcaacctgacgctcgagctcggcaagccgaagctgccgcgg
ttcccgacgcccgacggcatgtcgctcgacgactacctcgtgcagttgtcgcaggaaggg
ctcgacaaacgcctcgtgcagctctacccggacgaggccgagcgcgaagcgcaacgcggg
aagtacaaccagcgtctcgatttcgagtgcggcacgatcaagaagatgggctttccgggc
tacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtgggc
cccgggcggggctcgggcgcgggctcgctcgtcgcgtattcgctcggcatcaccgatctc
gatccgctgcgctacaacctgctgttcgagcgcttcctgaacccggagcgggtgtcgatg
cccgacttcgacatcgacttctgccagcacggccgcgaccgcgtgatccagtacgtgaag
gagaagtacggcgcggacgcggtgtcgcagatcgccaccttcggcacgatggccgcgaag
gcggccgtgcgggatatcggccgggtgctcgatctcggctacatgttcaccgacggcgtc
gcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgccgacgcgatgaaggaa
gagccgctcctgcaggagcgctacgacaacgaggacgaagtccatcagttgctcgatctc
gcgcagcgcgtggagggcctcacgcgcaacgtcgggatgcacgcgggcggcgtgctgatc
gcgcccggcaagctgaccgatttctgccccctctacacgcagggcgacgaaggcggcgtc
gtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgactttctc
ggcctcacgacgctcacgattctcgactgggccgagcgctacattcgccgtctcgatccg
agcaaggagaactggtcgctcgcgcaggtgccgctcgacgatccgacgtcgttccagatc
ctcaagaaggccaacacggtcgccgtgttccagctggaaagccgcggcatgcaggggatg
ctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtaccgg
ccgggcccgatggacctgattccgagcttctgcgcgcgcaagcacgggcgcgagaaggtc
gactatccggatccgcgcgtcgagcctgtcctgaaagagacctacgggatcatggtctat
caggagcaggtgatgcagatggcgcagatcatcggcggctattcgctcggcggcgcggac
ttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggccaagcaccgcgagatc
ttcgccgagggcgccgcgaagaacggcctcacgcgcgagaagtccgacgagatcttcgac
ctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcgtacgcgctg
ctcgcgtattacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggccaac
atgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgattgcctcgtc
aacggcctcgccgtgctgccgcccgacatcaaccgctcgaactatcgcttcgagcccgtc
gccgaggccgacggcaaacgctcgcgcacgatccgctacggccttggcgcgatcaagggc
agcggccagaacgcgatcgaggagatcctgcgcgcacgcgaggaaaagccgttcgccgat
ctgttcgatttctgcgagcggatcgaccgccgcgtcgtgaaccgccgcacgatcgaagcg
atgattcgcgcgggcgcattcgattcgctgcacgagaatcgcgcgcagttgctcgcatcg
gtgccgctcgcgatggaggccgccgagcaggcggccgcgaacgcgctgcaggcgggcctg
ttcgacatcggcggcgtgcccgcgcaccagcacgcgctcgtcgacgagccggcgtgggac
gacaagcgtcgcctgcaggaagagaagggcgcgctcggcttctacctgtccggccatctg
ttcgacgcgtatcgcgacgaggtgcgccgtttcgtgcgccagaagctcggcgagctgaag
gaagggcgcgacaaggtggtggccggcgtgatcgcgtcgttgcgcacgcagatgacgcag
cgcggcaagatggtgatcgcgttgctcgacgacggcaccggccagtgcgaagtcaccgtg
ttcaacgagcagttcgacgcgaaccgcgcgctcttcaaggaggacgagctgctgatcgtc
caggggcaggcgcgcaacgacgcgttcacgggcggaattcgcttcaccgccgagtcggtg
atggacctcgagcgtgcgcgcagccgctacgcgcaggcggtgcggatgacgatgaacggc
aacgcggacgcggcggcgctgcgccgcgtgctggaagcgcacgtcgcgaaacccgacgag
acgccgcccgccgcggcgccggcgccgcgcggcggccgcgacggcgggcggcgggcgcag
gcggcgataccgaatggtctcgccgtgcggatcgcatacagcaacgcgcgtgcgcaaggc
gagatgcgcctgggcgacgcatggcgcgtgaagccgagcgacgcgttgctcgccgatctg
cgcgcggcgttcggcggcagcgtcgtcgagatcgtctactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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