KEGG   Paraburkholderia phytofirmans PsJN: Bphyt_3652
Entry
Bphyt_3652        CDS       T00765                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bpy  Paraburkholderia phytofirmans PsJN
Pathway
bpy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bpy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Bphyt_3652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bpy03021]
    Bphyt_3652
   03400 DNA repair and recombination proteins [BR:bpy03400]
    Bphyt_3652
Enzymes [BR:bpy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Bphyt_3652
Transcription machinery [BR:bpy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Bphyt_3652
DNA repair and recombination proteins [BR:bpy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Bphyt_3652
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 UbiD
Other DBs
NCBI-ProteinID: ACD18042
UniProt: B2T759
Position
1:complement(4086531..4090637)
AA seq 1368 aa
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE
GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLG
RVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRID
ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGSLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGVVDYVDAGRMVIRVNDDEAAAGETGVDIYNLIKYTRSNQNTNINQRPIVKVG
DIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDIR
LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLQRQAKIAELREFLTKIYNESGRAEELDSFTDDEIVELAKNLREGVPFAT
PVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq 4107 nt   +upstreamnt  +downstreamnt
atgcaatattccttcaccgagaagaagcgtattcgcaagagttttgcgaagcgccccatc
gttcaccaagtacctttcctgctggctacccagcttgaatcattcagcacgtttctgcaa
gcagacacgtcgtccacgcaacgcaagccggaaggcctgcaagctgcgtttacctccgtt
tttccgattgtttcgcataacgggttcgctcgtctagagttcgtcagctacatgctgtcg
ccgccggcattcaacatcaaagaatgtcagcagcgcggtttgacgtactgctcggcgctg
cgcgcgaaagtgcgtctggtgctgctcgacaaggaatcgccgagcaagccggtcgtcaag
gaagtgaaggaacaggaagtgtacatgggcgaaattccgctcatgacgccgacgggttcg
ttcgtcatcaacggcacggaacgtgtgatcgtttcgcagctgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaagctcctgttctcggcacgt
atcattccctaccgcggttcgtggctcgatttcgagttcgacccgaaggacgtgctgtac
ttccgcgtcgaccgtcgtcgcaagatgccggtcacgatcctgctgaaggcaatcggcctc
acgccggaacagatcctcgcaaacttcttcgtgttcgataatttcacgctgatgccggaa
ggcgcgcagatggaattcgtgcccgagcgtctgcgtggtgaagtcgcgcgtttcgacatc
acggaccgtgatggcaacgtgatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgacctcgacaacgccaagaccaagttcatctcggtcccggaagactatttgctcggc
cgcgtgctggcaaagaatgtcgtcgacggcgacacgggtgaagtcatcgccaacgcgaac
gacgaaatcacggaaaccgtgctcgagaagttgcgcgagtcgaagatcaaagacatccag
acgctctatacgaacgatctggatcaaggtccgtacatctcgtcgacgctgcgtatcgac
gaaaccgcggacaagatggccgctcgcatcgcgatctaccgcatgatgcgtccgggcgaa
ccgccgaccgaagaagcggtcgaggcgctgttcaaccgtctgttctacagcgaagacgca
tacgacctctcgaaggtgggtcgtatgaagttcaatcgccgtgtcggccgcgacgaaatc
gtcggcccgatgacgctgcaagacgacgacatcctcgccacgatcaagatcctggtcgag
ttgcgtaacggcaagggcgaagtggacgacatcgaccacttgggcaatcgtcgtgtgcgt
tgcgtgggcgaactggcggaaaaccagttccgcgcaggtctcgtgcgtgtcgaacgtgct
gtgaaggaacgtctgggtcaggccgaaagcgaaaacctgatgccgcacgacctgatcaat
tcgaagccgatttcgtcggcaattcgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaattacccacaagcgccgtgtttcggctcttggc
ccgggcggtttgacgcgtgagcgcgctggctttgaagtccgcgacgtgcacccgactcat
tatggtcgcgtgtgcccgattgaaacgccggaaggtccgaacatcggcctgatcaactca
ctcgctctgtacgcgcacctgaacgaatacggcttcctcgaaacgccgtatcgcaaggtc
gtggacagcaaggtgaccgatcagatcgactatctgtcggcgatcgaagagggccgttac
gtgatcgctcaggcgaacgcggcggtggcggaagacggctcgctgaccgacgaactggtg
tcgtcgcgtgaagccggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcaaatcgtgtcggtggcagcatcgctgattccgttcctcgagcacgat
gacgcgaaccgcgcattgatgggttcgaacatgcagcgtcaggctgtgccgtgtctgcgt
cctgaaaaggccgtggtcgggacgggtatcgagcgcacggtggcagtcgactcgggtacg
accgttcaggcattccgcggcggtgtggtcgattacgtcgacgcgggccgtatggtgatc
cgcgtgaacgacgatgaagccgcggccggcgaaaccggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgcccgatcgtaaaggtcggc
gacatcgtgtcgcgtggcgacgtgctggctgatggtgcatcgaccgacctcggcgaactg
gctctcggccagaacatgctggtggcgttcatgccgtggaacggctacaacttcgaagac
tcgattttgatctcggagaaggtggttgcggacgaccgttacacgtcgatccacatcgaa
gaactgaacgtcgttgctcgcgatacgaagctcggaccggaagaaatcacgcgcgacatc
tcgaacctggctgaagtgcaactcggccgtctcgatgagtcgggcatcgtctacatcggc
gctgaagtcgaagcgggcgacgtgctggtcggcaaggtcacgccgaagggcgaaacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggtgaaaaggcttcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcaccgtgatcgacgttcaagtgttc
acgcgtgaaggcattcagcgcgacaagcgtgcgcaacagatcatcgacgatgaactgaag
cgctatcgcctcgacctgaacgaccagttgcgtatcgtggaaggcgacgcgttccagcgt
ctcgcacgtatgctcgacggcaaggtcgcgaacggcggtccgaagaagctggcgaagggc
acgaagatcgaacaggcttacctgcaagatctggatcattaccactggttcgacatccgc
ctcgcggacgaagaagcagcggcacagctcgaagccatcaaggactcgatcgaacagaag
cgtcaccagttcgatctggcgttcgaagaaaagcgcaaaaagctcacgcaaggcgacgaa
ctgccgccgggcgtgttgaagatggtcaaggtgtacctggcagtcaagcgccgcctgcag
cctggcgacaagatggccggccgtcacggtaacaagggtgtcgtgtcgaagatcgttccg
atcgaagacatgccgtacatggccgacggccgtccggctgacgtcgttctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcaggttctcgaagtgcatctgggttgggccgcg
aagggtctcggctggcgtatcggcgaaatgctgcagcgtcaggcgaagatcgctgaactg
cgcgaattcctgaccaagatctacaacgagtcgggccgcgctgaagagctggacagcttc
acggacgacgagatcgtcgaactggcgaagaacctgcgcgaaggcgttccgttcgctacg
ccggtgttcgacggcgcgacggaagaagaaatgtcgcgcgcgctggatctggcattcccg
gacgacatcgcgaagaacctcggcatgacgccgtcgaagaatcaggtgcgtctgtacgac
ggccgcacgggcgaaatgttcgaacgtacggtgacggtcggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttccacgggcccgtactcgctcgtg
acgcagcagccgttgggcggtaaggcgcaattcggtggccagcgtttcggtgaaatggaa
gtgtgggcgctcgaagcgtacggcgcatcgtatgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgacaggccggaccaaggtttatgaaaacctggtcaagggcgatcacgtg
atcgacgccggcatgccggaatccttcaacgtgttggtgaaggaaatccgctcgctcggt
atcgatatcgacctcgaccgcaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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