KEGG   Paraburkholderia phytofirmans PsJN: Bphyt_6329
Entry
Bphyt_6329        CDS       T00765                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
bpy  Paraburkholderia phytofirmans PsJN
Pathway
bpy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bphyt_6329
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpy03019]
    Bphyt_6329
   03400 DNA repair and recombination proteins [BR:bpy03400]
    Bphyt_6329
Enzymes [BR:bpy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Bphyt_6329
Messenger RNA biogenesis [BR:bpy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Bphyt_6329
DNA repair and recombination proteins [BR:bpy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Bphyt_6329
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII AAA_30 AAA_22
Other DBs
NCBI-ProteinID: ACD20655
UniProt: B2TB59
Position
2:complement(2589842..2591608)
AA seq 588 aa
MTLDQRIRSMRRTMREMFGISRLRAGQEEIIRSVLERRDTLATMPTGAGKSLCYQLPALH
LDGTTLVVSPLIALMKDQADKLAASGIDCTVVNSTLRRRAEREALERIAGGEGGIVFVTP
ERLTQPAFIDILRSHADRRIGLVVVDEAHCVSHWGHDFRPAFLEIASAVKAIGRPPVLAL
TATATAEVLEDIVRSLGLREPRIVRTGTLRQNLRYRVVQVSTAGGKDGGTRAMEAKREQL
RELTHSLAGTGIIYAATVADVERIHGWLVEAGESVSRYHGRLATNVRDEAQEQFMSGATR
LMVATNAFGMGIDKADIRFVIHYQMPGSLDAYYQETGRAGRDGEPADCVLLFDLGDRRIQ
QFFLAGRYPSAELAQRVYDALVACCEQNAKGATLTALKQVLADVGSAKLEVALNMLVDAR
IAGRDRQHRYRLLTRPAADHPAETPRELVAKAAERFEQMSAHDKETLQKMIDYAQTGQCR
WRAILDYYGDTPHMERCGVCDNCVSPPQIDVRFDTDTPISETSSPIKPRASEPREPHRWA
PGDPVRVPRYGVGEVALASGEQVAVQFPDGHTRTFMSNYVRAARRSLS
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgactctcgaccagcgtatcagaagcatgcgtagaaccatgcgcgaaatgttcggcatc
tcccgcttacgcgccggccaggaagagatcattcgcagcgtgctcgaacggcgcgatacg
ctcgccacgatgccgaccggggccggcaaatcgctgtgctatcagctacccgcgctgcat
cttgacggcacgaccctggtcgtatcgccgctcatcgcgctcatgaaggatcaggcggac
aaactcgctgcgtcgggcatcgattgcacggttgtgaatagcacgttgcgacggcgcgcg
gagcgcgaagccctggagcggatcgcgggcggggagggcggcatcgtattcgttacgccg
gagcgcctcacgcagccggcttttatcgatatcttgcgatcccatgccgatcgccgcatt
ggactcgtagtggtcgatgaagcgcattgcgtttcgcattggggtcacgacttccggccg
gccttcttggaaatcgcgagcgcggtcaaagctattggccggccgccggtacttgctctg
accgcgacggccaccgctgaggtgctggaagacatcgtgcgctcgttgggcttgcgcgag
ccgcgaatcgtacggaccggtacgctgcgtcaaaatctgcgctaccgggtcgtgcaggtc
agcacggccggcggcaaagacggcggcactcgcgcgatggaagcgaaacgcgaacaactg
cgcgaactgacccactcactcgcgggcaccggcattatctacgccgcgacggtggcggac
gtcgagcgcattcacggctggctcgtcgaggcgggcgaatcggtctcgcgctatcacggt
cggctggccacgaacgtgcgcgacgaagcgcaggagcagttcatgtccggggcgacgcgc
ttaatggttgccaccaacgcattcggcatgggcatcgacaaagcggatatccgcttcgtg
atccactatcaaatgcccggcagcctcgacgcgtattaccaggaaacgggccgcgcgggc
cgggacggcgaaccggccgactgtgtgctcctgttcgatctcggcgaccggcgcattcag
cagttttttctggccggccgttatccgagcgccgaacttgcacagcgcgtgtacgacgcg
ctggtggcatgttgcgaacagaacgcgaagggcgcaacgctcacggcactcaaacaagta
ttggccgatgtcggaagcgccaagctggaagttgcgctgaacatgctggtggacgcgcgt
attgcaggacgtgaccggcagcaccgctatcggctgctcacgcggccagcagcggaccac
cccgccgaaacgccacgcgagctagtggcaaaagctgccgagcgattcgagcaaatgagc
gcgcacgataaggaaaccttgcagaagatgatcgactacgcgcagaccggccaatgtcgc
tggcgcgcaattctcgattattacggcgatacgccacacatggagcgctgcggcgtgtgc
gacaactgcgtgagtccgccgcaaatcgacgtgcggttcgacaccgacaccccgatctcc
gagacatcgtcgccgataaaaccacgtgcatctgagccgcgtgagccgcatcgatgggcg
cccggcgatccggtgcgtgtgccgcgctacggggtgggtgaagttgcactggcgagcggc
gagcaggtcgcggtgcagtttccggacggccacactcgcaccttcatgtcgaactatgtg
cgagcagcgcgccggagtctgtcatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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