KEGG T02294: RM11

Bartonella quintana RM-11: RM11_0563

Entry

RM11_0563         CDS       T02294

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

bqr Bartonella quintana RM-11

Pathway

bqr03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bqr00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RM11_0563
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bqr03019]
    RM11_0563
   03009 Ribosome biogenesis [BR:bqr03009]
    RM11_0563
Enzymes [BR:bqr01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     RM11_0563
Messenger RNA biogenesis [BR:bqr03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RM11_0563
Ribosome biogenesis [BR:bqr03009]
Prokaryotic type
  rRNA processing factors
   RM11_0563

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG

Other DBs

NCBI-GeneID:

13563437

NCBI-ProteinID:

AFR26294

Position

complement(697738..700368)

AA seq 876 aa
MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE
YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEKASGGENHSDALIEETNKNKKRSRKT
KKDQKNKIMAADVENAIISDAITTDDAEEAFDSDISHDYIEMVGTEDVREELPTYQRRQG
RQYKIQEVIKRRQILLVQIIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN
IQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLTRLWDTVRTLTLKSTAP
CLVHEESNLIKRSIRDLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDLIPI
FVRNNIEIQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLE
AAEEIARQLRLRDLAGLIVIDFIDMLEDRNVRMVEKKLKDCLKNDRARIQVGHISHFGLL
EMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNPQYNIIVRTPV
ATALYVLNHKRNILVNLEARFKLNISIEADNNIGTQHLIISKGTIAAAFSQQPPLVFEND
SKKEIKDAIVTEGISTEDKTPVETNRRRRRKNRQDERNDNSLSTVYKKDDTLNDDSRRRG
RHRGRRGGRGNQENNSYQICIPYAEPVGDFAKQTLVEIKAAHRKHRVPIAKPIEFEEVES
DTQHLGIQQDETVKVDTVAKPKTHKVRSSKTLQNQQILENDQSIITPEPLEEKSTDSSIH
KVKTKKVDKSAHEVVEKTPANGKKSTRKTREKSFPDKSTQTKEISEQKTAIKEVGELTHS
QIKETVNQSVVISSIPDDASKAKRVGWWKRRTLSKN

NT seq 2631 nt +upstreamnt +downstreamnt
atgtcaaacaaaatgcttatagatgcctcccacccagaggaaacacgtgttgttgttgtt
cacggaaacaaaattgaagaacttgattttgaatcagaacataaaaagcagctcaagggg
aatatttatctagcacgtattacccgtgtagagccatctctccaagcggcttttgtcgaa
tatggtggcaaccgccatggttttttgacattttctgaaattcatcccgattattatcaa
attcctatcgctgatcgcctcgctcttcttgaagaagaagaaaaagcttctggcggagaa
aatcattcagatgctctcattgaagaaacaaacaaaaataaaaaacgctccagaaaaaca
aaaaaagatcagaaaaacaaaatcatggcagcagatgttgaaaatgctattatatctgat
gcaataacaactgatgatgcagaagaagcttttgattcagatatttctcatgactatatc
gaaatggttggtacagaagatgtacgtgaagaactccccacttatcagcgtagacaagga
cgtcagtataaaattcaagaggtcattaaacgacgtcaaattttgttggtgcaaatcatc
aaggaagagcgtggcaataagggcgctgcactcacgacgtatttatccctagcaggacgt
tattctgttttaatgcccaacacagcacgcggtggtggtatttcacggaaaatcacaaat
atacaagatcgcaagcgtcttaaagaaattgtgaaagaattagcagttccaaagggtatg
ggagttatcctaagaactgctggagcaaatagaacaaaagctgaaattaaacgcgattat
gaatatcttacacggttatgggatactgttcgcactttaacacttaaatcaactgcacca
tgccttgtccatgaagaaagcaatcttataaagcgttctatccgcgatctttacaataag
aatatcaatgaaattcttgtatctggtgatcaaggatatcgtgaagcaaaagacttcatg
cggatgctgatgccaagtcatgcaaaagttgtgcaaccttatcgcgatcttatccctatt
ttcgtgcgaaataatatcgaaattcaacttgataaaatgttgcacccacaagtttcttta
aaatctggtggttatcttgttattaatcaaacagaagcgctcgttgctattgatgtaaat
tctggacgttccaccaaggaacattctgtcgaaaaaacagcattacaaaccaatcttgaa
gccgcagaagaaatagcacgtcaattacgcttgcgtgatctcgctggtctgattgtgatt
gatttcattgatatgcttgaagatcgcaatgttaggatggttgaaaaaaagttgaaagat
tgcctaaaaaacgatcgtgcccgtattcaagttggtcacatttcacatttcggccttctg
gaaatgagtcgtcaacgtattcgtatatcggttttagaaagtacaacacaaccctgcccg
cattgtgctggaacaggaaatatacgctctgaatcatcaattgctttacatgtcatgcgc
tcaattgaggaatatcttcttcataatccgcaatataatattattgtacgcacgcccgta
gcaacggcactttatgtgttaaaccacaagcgaaatattcttgttaatttagaagcacgt
tttaagcttaatattagtattgaagcagataataacattggaacgcaacatctcattatt
tctaaaggtacaatagcagcagcattttctcagcagcctccattagtttttgaaaatgac
agtaaaaaagaaattaaggatgcaatcgtaacagagggcatatctaccgaagataaaaca
cccgttgaaacaaatagacgacgtcggcgtaaaaatcggcaagatgagagaaatgacaat
tctctctccactgtttataaaaaagacgatacacttaatgatgattcccgtcgtcgggga
cgtcatcggggacgtcgcggcggtcgcggtaatcaggaaaataattcttatcagatttgt
attccttatgcagaaccagtgggagactttgctaaacagaccttggtagaaattaaagca
gcgcaccgcaaacatcgtgttccaattgctaagcctattgaatttgaagaagtagaaagc
gatacacaacacttaggcatacaacaggatgaaactgtaaaagttgatacagtcgctaaa
cctaaaacacataaagtgcgttcatcaaaaacactgcaaaatcagcaaatccttgaaaac
gatcaaagtataataaccccagaacctttagaagaaaaatctacagacagctcgatacat
aaagttaaaacaaagaaagtagataaatctgctcatgaggtggtagaaaaaactcctgca
aatggtaaaaaatcaacacgaaaaacacgcgaaaaatcattccctgataaatcaacgcaa
acaaaagaaatatcagaacaaaaaactgcaataaaagaagttggcgaactaactcattcc
caaattaaagagacagtcaaccaatccgttgttatatcatcaatacctgatgatgcttcc
aaagctaagcgtgttggttggtggaaacgcagaacactttccaaaaattaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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