KEGG   Bartonella quintana Toulouse: BQ07120
Entry
BQ07120           CDS       T00181                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bqu  Bartonella quintana Toulouse
Pathway
bqu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bqu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BQ07120 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bqu03021]
    BQ07120 (rpoC)
   03400 DNA repair and recombination proteins [BR:bqu03400]
    BQ07120 (rpoC)
Enzymes [BR:bqu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BQ07120 (rpoC)
Transcription machinery [BR:bqu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BQ07120 (rpoC)
DNA repair and recombination proteins [BR:bqu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BQ07120 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: CAF26201
UniProt: Q6FZM0
Position
complement(841781..845989)
AA seq 1402 aa
MNHEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTESGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLAGMELEKIANDLRVELSETTSELKQKKLIKRLKIVENFLESGNRPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFSDMGELHHALE
NKVVTLHTKIKGRVKNIDKDGKEVAKLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
ISKMIDQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKLRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPKTGRQRPMNSIY
MMSHSGARGSANQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVIVEGGVMIEETDVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASYEGTVEIRNRN
VVHNSEGHLVVMGRNMVILIKDGSGKERVVHRISYGAHIFVDDGDVVKCGQRIAEWDPYT
RPILTEVEGYVGFEDMIDGLSVTETADESTGITKRLVIDWRANPRGADLKPAIIIHADKK
GEDIAKYKGGEARYMMSVDTILSVEPGAHVKAGDVIARLPMESAKTKDITGGLPRVAELF
EARRPKDHAIIAEVSGTIQFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHFQEGDQI
EKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKV
EITESGDSGYIPGDHVDRIELDEINDNLIAEGKRPASGNPILLGITKASLQTPSFISAAS
FQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIAAVRDNLIVDERR
KSSDSQVAKIMLTNMTTGATAE
NT seq 4209 nt   +upstreamnt  +downstreamnt
atgaaccacgaggtcatgaatcttttcaatcctcaggcgccagcgcagacatttgactct
attcgtatttcaattgcgagccctgagaagattttgtcttggtcgtatggtgagatcaag
aagcctgagactattaattataggacttttaagccagagcgtgatggtcttttctgtgca
cgtatatttggcccgattaaagactacgaatgtctatgcggtaaatataaacgcatgaaa
tataagggcattatctgtgaaaaatgtggtgtagaggttactctttcgcgtgtacgtcgt
gagcgtatgggacacattgaacttgcagcacctgtcgctcatatttggttccttaaatca
ttaccaggtcgcatttccacacttttagatttgactttgaaagatattgaacgggttctc
tattttgagaattatattgtaacagaatcaggattgacatcccttaagcttcatcagctt
ctttctgaagaagagtatatgcttgctattgatgagttcggggaagatcagtttacagct
atgattggtgctgaggctatttacgaacttctagctggtatggagttggagaaaattgcc
aatgatttgcgtgtcgaattgtctgagacaacttcggaattaaagcagaaaaaactgatt
aaacggcttaagattgttgaaaatttccttgaatctggcaatagaccggagtggatgatt
atgaaaacgattccggttattccaccggatttacgtccgttggttccacttgatggtggt
cgttttgctacgtccgatttgaacgatctttatcggcgggttataaatcgtaataaccgg
ttgaaacgactgattgagttgcgtgctcctgggattattgttcgcaatgaaaaacgtatg
gtgcaagaagctgttgatgcattgtttgataacggccggcgtgggcgtgtgattactgga
gccaataagcgtccgctaaaatctctttcagacatgctaaagggtaagcaagggcgtttc
cgtcaaaacttacttggaaaacgtgttgattactcagggcgttctgttattgtgacaggt
cctgaattaaaattacatcagtgtggtcttcccaaaaaaatggctctcgaattatttaag
ccatttatttatgcacggcttgatgcgaagggatattcatcaactgtaaaacaggcaaaa
aagcttgttgagaaagagcatccagaagtttgggatatcttggatgaggttattcgtgaa
catcctgttttgctgaatcgtgcgccgacattgcaccgtttggggattcaggcctttgag
cctattttgattgagggaaaagctatacagcttcatccattggtgtgtactgcttttaat
gcggattttgatggtgatcagatggcggttcacgttccgctttctcttgaagcacagctt
gaagcgcgtgttttaatgatgtcgaccaataatattcttcatccagccaatggtgcgcca
atcattgttccgtcacaggatatggttcttggtctttactatctttcgattgtttctgaa
aaagaaccaggtgaggggatggctttttctgatatgggtgagctccatcatgctctagaa
aataaggttgtaactcttcacacgaaaatcaaaggccgtgttaaaaatatcgataaggat
ggaaaagaagttgctaaactttatgatacaacacctggtcgtttgattattggtgagctt
ttaccaaaaaacccgaatatttcctttgatattgttaatcaagaaatgactaaaaagaac
atttctaaaatgattgatcaggtttatcgacactgtgggcaaaaagagacggttattttc
tgtgaccgtattatgcagcttggcttttctcatgcttgtcgtgcgggaatttcgtttggt
aaggatgatatggttatccctgatagcaagttacgtttggttgcagaaacggaagctttg
gctaaagagtatgaacagcaatataatgatggtctgattacacaaggtgaaaaatataac
aaagttgtagatgcttgggggaaatgtacggatcgcgttgcagatgaaatgatgaaacgt
attcaggctgtcgaatttgatcctaaaacaggtcgtcagcggccaatgaattcgatctat
atgatgtcgcattccggtgcgcgtggttctgctaaccagatgaaacagttggctggtatg
cgtgggttaatggcaaaaccatcaggtgaaattattgaaacaccaatcatttcaaacttt
aaggaaggcctaactgttaatgagtactttaactcgactcacggtgcacgtaaagggctt
gctgatactgcattaaaaactgccaactctggttatctaacacggcgtcttgttgatgtt
gcacaggatgctattatttcagcagttgattgtggtactgcaaagggtcttaccatgcag
ccaattgttgatgcaggacaaattgttgcgtctcttgggcaacgaattcttggtcgcaca
gcgcttgttgatattctgcatccagtttctggagaggttattgttgaaggtggtgtgatg
attgaggagactgatgttgctaaaattgaagaagccggaatccagtctgttcaaatccgc
tctgctttgacatgtgaaacgcgccttggtgtttgtgccaagtgctatggtcgtgatttg
gcgcgtgggacaccggttaatcagggtgaggccgttggtgttattgccgctcagtcaatt
ggtgaaccaggaactcagcttactatgcgtactttccacttgggggggacggcgcaggtt
gtggattcgtctcatttagaagcatcttatgaaggtacagtagagattcgtaatcgcaat
gtggttcataattctgaaggccatttggtggttatgggacgtaatatggttatccttatc
aaggatggatccggaaaagagcgggttgtgcatcgtattagctatggtgcgcatattttt
gttgatgatggtgatgttgttaaatgtggtcaacgtattgcagaatgggatccctatacg
cgtccaattcttactgaagttgaggggtatgtaggttttgaagacatgattgatggttta
tcagtgactgaaacggctgatgaatctacgggtattacgaagcgtttagtgattgattgg
cgtgctaatccacgtggtgctgatctaaaaccagccattatcatccatgcagacaagaaa
ggtgaagacattgccaaatataagggaggtgaagcccgttatatgatgtcagtggatact
attctttctgttgagcctggtgcccatgttaaggcaggtgatgttattgctcgcttgcca
atggaaagtgctaaaacaaaagatattacaggtggtcttccacgtgtggctgagcttttt
gaagcgcggcgtccgaaagatcatgctattattgccgaagtcagtggtacaattcaattt
ggtcgtggttataaaaataagcgtcgtattatcattgaaccaaatgatgaaactctcgaa
ccagtagaatatttgattccaaagggcaagttgtttcacttccaagaaggcgaccaaatt
gaaaaaggggattatatccttgatggtaatccggctcctcatgatatcttggcgattaag
ggtgttgaagctttggcatcttatcttgttaatgaaattcaggaagtttatcgtttgcag
ggtgttttaattaatgacaagcacattgaagtgattgttcgtcaaatgttgcaaaaagtt
gaaattactgaatctggagattctggttatattccaggtgatcatgttgaccgtattgaa
ttagatgaaatcaatgataatttaattgccgaagggaaaagacctgcttctggtaatcct
atcctgcttgggattacaaaagcatctcttcaaacaccatcctttatttcagcagcatca
tttcaggaaacaactcgagtgcttactgaagcagcagtttccggaaagattgatactttg
caaggtcttaaggagaatgttattgttggtcgtcttattcctgcgggtacaggtggtacg
attgctcaaattcgtcgtattgctgcagttcgtgacaatttgatcgttgatgaacggcgc
aaatctagtgatagccaagtggctaagattatgttaacaaatatgacaaccggagcaact
gctgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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