KEGG   Brassica rapa (field mustard): 103827626
Entry
103827626         CDS       T03449                                 
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B
  KO
K11267  sister chromatid cohesion protein PDS5
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:brp03036]
    103827626
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Adherin complex
    103827626
SSDB
Motif
Pfam: PDS5 PTM_DIR17_Tudor Rad9_Rad53_bind LBR_tudor
Other DBs
NCBI-GeneID: 103827626
NCBI-ProteinID: XP_009101396
Position
A06:complement(27104259..27113752)
AA seq 1605 aa
MAQKPEELLKELGSKLDPPPSSKDSLLKLFKEAAVHLSELEQSPPAAVLKSIQPFLDAVI
KPEILKHQDKDVKLLVASCVSEITRITAPEAPYSDDIMRDIFQLIVSAFSGLDDVGGPSF
GRRVVILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEVVLSSMQSIMIVLLE
ESEDIQEQLLLILLSKFGRNRSDVGDAARRLAMKVIEQCAPKVESDIKQFLISSVSGDSR
FSSSQIDYHEVIYDLYRCAPQTLSGIAPYLTGELLADNLETRLKAVGLVGELFSLPGRVI
SEEFSSIFLEFLKRLTDRVVEVRMVILDHIKNCLLSDPSRAEASQIISALRDRLLDYDEN
IRKEVVSVICDVAVSELASIPIDTIKLVAERLRDKAMLVKTYTVERLTELFRVYCLRCTE
GKAGTGDFDWIPGKILRCLYDKDFKSDTIEYILCRSLFPSDFSVRDKVKHWIEIFSGFEN
AETKAFEKILEQRQRVQQEMQKYLSFKQQSADSPEMQKKILFGFRVMSRAFSDPAKTEQN
FLILDQLKDANIWKILNNLLDPNTSIMQASKIRDDMLKILSEKHSLYEFLGTLSIKCSYL
LFSKEYVKEILAEVSARKASKTSSGIQSCMDFLGLLASFCPSLFDGAEEELIGFLKDDDE
IIKEGALKILAKAGGTIRENLIVSASSVDLLLERMCVEDNRKQAKYAVHALASITKDDGL
KSLSVLYKSLVDMLDDKRHQPAVLQSLGCIAQIAMPVFETRETEVVEFIRDKILKSESIA
ADEDNWDDKSEMCQLKIYGIKTLVKSYLPFNDAHLRTGVDDLLELLKNILSFGEVSEDIE
SSSVDKAHLKLAAAKAVLRLSRHWDDKIPVDIFHLTLKTPEISFPMAKKIFLGKVHQYVK
DRVLETKYASSFLFDITGSNVLVSEEEKQNLADIIQHSYQTKVRKVSAQTDANSVSPHPQ
HILPYLVHALAHLSCPDVEKCKDVEEYEMIYRQLHLIISMLLHKEEDGKAEDGDKEHECV
PTIISIFRSIKQSEDVTDATKSKSSHAICELGLSIIKHLTQKELDLQGEFMPVSLPPTLY
KPSENNEGDKSQVGEEQLWLADETVLAHFSSLMLESHADLSEIPPTTEIEVMDNEDSDGN
ELPLGKIVERLRAQSRKGKKNKSIPAEDDENGKKEDVDVLKMVREINLDHLKLDKFESSN
GHTHSPVEKADTSHSDQKANKRSAGNATSVVSVPKRRRSSSGHSPFKFSSSDPLKASKKE
LLEERDMDANISSDSDKGKSRSSRKRKKSFSAKLKNSESDPENQSEDGNCSEKSKSAENG
DKLKSASGSIKRKRKSIAGPTKCSTAEKKMVTDELIGCRIDVWWPMDKRFYEGTVKSYDS
TKKKHVILYEDGDVEVLRLDKEHWELIETKPAKKSSASKRSSNKKGSSESKRKSRSGLQR
KEDPIPTTPKGKRTPKKNIKRKDPEGTANSLSLEDEKPKLRTKKNRASGVVEVAEKASEE
KMESSTEQMGEDPKYGGEADEEKSESEGKSRKEGEDDEEAEFKEANAESSGDSEEKETTV
ENSDSEGKQEEIEAEEDAVDAEASDNETLGAWKSKVAKSSSRKSA
NT seq 4818 nt   +upstreamnt  +downstreamnt
atggctcaaaagcccgaggagctgttgaaggagctcggatcgaagctcgacccacctcct
tcgtctaaagattcattgctcaaactctttaaggaagctgctgttcatctatctgagttg
gagcagtctccaccagcagcagtactgaagtccatccagccttttcttgatgcagttatt
aaacctgaaatcctcaagcatcaagacaaggatgtcaagcttcttgttgcaagctgcgtt
tctgagataactcgtatcacagcacctgaagcgccttacagtgatgatattatgagggat
atttttcaactgattgtgagtgccttttctgggttggatgatgtcggtggaccatcattt
ggaaggagggttgtcatcttagaaacggttgcaaagtacaggtcatgtgtagtcatgttg
gatctggagtgcgatgatctggtgaaagaagtctttactacatttcttgatgttgctaga
gatgaccacccggaggttgttctctcatcaatgcaaagtataatgattgttctcttagaa
gagagtgaagatatacaggagcagctgttactaatcctactctctaaatttggcagaaat
agaagtgacgttggagatgctgcgaggagacttgctatgaaagtcatagagcagtgtgcg
ccaaaagttgaatctgacataaagcagttccttatctcttcagtttctggagacagccga
ttttccagcagtcagattgactaccatgaagttatctatgatttgtaccgctgtgctccg
cagaccctatctggaattgcaccatatctcactggagagcttttggctgacaacctggaa
actcgcttgaaagcagttggattggttggagagttgttttccttgcctggacgtgtcatc
tccgaagagttcagttcaatctttttggagtttctgaagaggctgactgatagagtagtt
gaagttagaatggtcatccttgaccatattaagaattgcttgctctctgatccttcaaga
gctgaggcttctcaaattatatctgctcttcgtgaccggctcctggattatgatgagaat
atccgcaaagaagttgtttctgttatctgtgatgtggctgtgagtgaactggcgtcgatt
ccaattgacactataaagctagtcgctgaacgtcttcgagacaaagctatgcttgtaaaa
acatacacagtggaaaggttgactgaactgttccgggtatattgcctacggtgtactgaa
gggaaggcaggcactggcgactttgactggattcctggcaaaattttgagatgtctttat
gacaaagatttcaaatcagatacgattgaatatattttatgcagatcactgtttccaagt
gatttctctgttagagataaggttaagcattggatagaaatcttctccgggtttgaaaat
gcggagacaaaagcttttgagaaaatactggagcaaagacaaagggtacaacaagaaatg
caaaaatatttgtcattcaagcaacagagtgctgactctcctgagatgcagaaaaagatc
ctatttggattcagagttatgtcacgtgcattttctgatcccgcaaagaccgagcagaac
tttttgattcttgatcaactgaaagatgctaatatctggaagattttgaataatctgctt
gatcccaacactagcataatgcaagcgtccaagattcgggatgatatgcttaaaatactt
tctgaaaagcattctctctatgaatttctcggcactctctccataaaatgttcttatctg
ctattcagcaaagaatacgtgaaagaaatattagcggaagtctctgcgagaaaagcttct
aaaactagttcaggaattcaatcttgcatggacttcttagggcttctcgcaagtttctgc
ccatcactgtttgacggggctgaagaagaactgataggtttccttaaagatgatgatgag
attataaaggaaggtgctctaaaaattctggcaaaggcaggtggtactattcgggagaat
ctcattgtttcagcgagttctgtggacctgttactcgagaggatgtgtgtagaagataat
cggaagcaggctaagtatgctgtgcatgcactagcatcaattacaaaggatgatggcttg
aagtcgctgtctgttctatacaagagtctcgtggacatgctggatgacaagagacatcag
ccagccgttcttcagagtcttggatgcatagctcagattgcgatgccggtctttgagact
agagaaaccgaagtcgttgagtttattagagacaagatcctcaaaagcgaaagtatagct
gcagacgaagataactgggatgacaaaagtgagatgtgtcaacttaagatttatgggatc
aagacgttggttaagagttacttgcctttcaacgatgctcacctacgtactggtgttgat
gaccttcttgaattactaaaaaacattctttcctttggggaagtatctgaagatatagaa
tcaagttctgttgacaaggcccatttgaaacttgctgctgcaaaggcagtccttcgcctt
tctaggcactgggacgataaaattccggttgatatcttccacttaacactaaagacccct
gagatatcatttcctatggctaagaaaatatttctagggaaagttcaccagtatgtaaag
gatcgggttttggagacaaagtatgcctcttcattcttatttgatatcactggatcaaat
gttcttgtatcagaggaggaaaaacagaatctagctgatataattcaacattcttaccaa
acaaaagtgaggaaagtctctgcgcagactgatgcaaattcagtttctccccaccctcaa
catatccttccttatctggttcacgcacttgcacatctttcttgtcctgacgtcgagaaa
tgcaaggatgtggaggaatatgaaatgatatatcgacaattacacttgatcatttcaatg
ttactccataaagaggaagatgggaaggctgaagatggtgacaaggaacatgagtgcgtt
cccaccattatctctatcttccgcagtataaaacagtcagaagatgtcactgatgcaaca
aagtcaaagagctcacatgcgatctgcgagcttgggctttcaattattaagcacttaact
cagaaagagctcgacctacaaggggaattcatgccagtatcactgcctccaacgctgtac
aaaccttctgaaaataatgaaggtgacaagtctcaggttggtgaagagcaattgtggcta
gctgatgaaaccgtcttggcacacttcagttctcttatgttggagagtcatgctgattta
tctgagatacccccaacgacagagattgaggttatggataatgaagatagtgatgggaat
gaacttcctctgggtaaaattgtagagcgtttgagagctcagagcagaaaggggaaaaag
aacaaatctattccagctgaggatgatgagaatggtaaaaaggaggatgtggatgttttg
aaaatggtgagggagataaatctggatcacttaaagctggataaatttgaatccagtaat
ggacatacacattcccctgtcgagaaagcggacacatctcatagtgatcagaaggctaac
aaaaggagtgctggtaatgcaacgtcagtagtttcagtccctaaacgccgaagatcatct
tcgggacatagtcctttcaagttctcaagtagtgatccactgaaagcttctaaaaaagag
ttgcttgaagagagagacatggacgcaaatatctcctcggactcggacaagggaaaaagc
agatcttcccgaaaaagaaagaaaagcttctcagcaaaattaaagaactcagaatctgac
ccggaaaatcaaagcgaagatggcaactgcagtgagaagagtaagtcagcagaaaatggt
gacaaattgaagtctgcttctggatcaataaagcggaaaagaaagagcatcgcaggaccg
actaagtgctccacagcagaaaagaaaatggttactgatgaactcatcggttgcagaata
gatgtttggtggcctatggataaacggttttatgaaggcacagtgaaatcatatgattcc
acgaaaaagaaacatgtgatactttatgaggatggagatgtcgaagtacttcgcctagat
aaagaacattgggagctcatagagacgaagcccgctaagaagtccagtgcatcaaagcga
agttctaataaaaaaggatcttcggagagtaagcgtaagagtagatctggcttacaaagg
aaggaagacccaattcctactacgccaaaagggaaaagaactccaaagaaaaacataaaa
cgtaaggacccggaaggcacagcaaatagtctctcattagaagatgagaaaccaaagctg
agaaccaagaaaaaccgagcttctggagtcgtggaagttgctgaaaaagcaagtgaagag
aaaatggaatcatccacagagcagatgggagaggaccccaagtatggtggggaggccgac
gaagagaaatcagaatccgaaggaaagtcacggaaagaaggcgaggatgatgaggaagct
gagttcaaggaggcaaacgcagagtcgagtggggactctgaggagaaagaaactactgtt
gagaactcagattctgaggggaaacaagaggagatagaagctgaggaagatgccgttgat
gctgaggcttctgacaatgagactctgggagcgtggaaaagtaaagtggccaagtcaagc
tcgagaaaatcagcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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