KEGG   Brassica rapa (field mustard): 103828020
Entry
103828020         CDS       T03449                                 
Name
(RefSeq) 5'-3' exoribonuclease 2
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03008  Ribosome biogenesis in eukaryotes
brp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    103828020
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103828020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:brp03021]
    103828020
   03019 Messenger RNA biogenesis [BR:brp03019]
    103828020
   03009 Ribosome biogenesis [BR:brp03009]
    103828020
   03016 Transfer RNA biogenesis [BR:brp03016]
    103828020
Transcription machinery [BR:brp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     103828020
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     103828020
Ribosome biogenesis [BR:brp03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    103828020
Transfer RNA biogenesis [BR:brp03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    103828020
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 103828020
NCBI-ProteinID: XP_009101845
Position
A06:complement(28734938..28741437)
AA seq 981 aa
MGVPSFYRWLIERYPLILQDAIEEEALDVKVPVDTSKPNPNGGVEYDNLYLDMNGIIHPC
FHPEDRASPTTFSEVFQCMFDYIDRLFLMVRPRKLLFLAIDGVAPRAKMNQQRSRRFRAA
KDAAEAAAEEERLRQEFESEGKRLPPKLDSQVFDSNVITPGTEFMSTLSFALQYYIHVRL
NSDPGWKNIKVILSDANVPGEGEHKIMSYIRLQKNHPGYNPNACHCLYGLDADLIMLALA
THEVHISILREVVFTPGQQDKCFLCGQLGHRAADCEGKTGDLSDKAESDVVAKKPYQFVN
IWTLREYLEHDMQIPNSQLQKNLDRIIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMS
VYKKEFGSSTSYLSNGSKLNLKNVEHFIQAVGLYENNIFQRRAQNHQRQSERFSRDRAKS
SRNCNYDPVVQLDSLVEVSDSLRPSLDDNTSVETEYNIQEEVDNREELKFKLKKLLREKS
DGFISGKGEEDKVRLGVQGWRERYYEEKFIAKTIEEMKQIRRDVVLKYTEGLCWIMHYYY
HGVCSWNWFYPYHYAPFASDLKFLDKLDIKFELGSPFKPFNQLLAVLPSASAHALPECFR
KLMTDPSSPIAEFYPPDFEIDMNGKRYSWQGIAKLPFIEEQRLLDAAAKVEHSLTNEEVR
RNSVLSDMLFVVSSHPLAELIRSLSSRTIKLSNKERAAVTEKIDPGLSEGMNGYLALCGG
DSQPSCFSSPIEGMEDVLANQVICAIYKLPDDLRGSDIARPPPGVVLPKKTVQLADLKGG
ANLWHEDGDRRRAPAKIIKIKRYNPKGSISGVRLRKAAHRLVLQTISSQPDNTHINSEPA
LCPNTIFHNNQVSRNVPSPRGSAVQRKHPQSELALKKNRIHQSEVTEEEKTAIRKRKEKE
KRGRYKANRRERAKNEQQANKGESNLDNKRPRSEVNEENRLEHKRPRFTEGKEQNTCAQS
ELTEEKNAKRKRMEKEKKREI
NT seq 2946 nt   +upstreamnt  +downstreamnt
atgggagtaccgtcgttctacagatggttaattgagaggtatccactgattttgcaagat
gccatcgaagaagaagctctcgacgtcaaggttccggtcgacactagcaaacctaatcct
aacggcggcgtcgagtatgacaatctgtacctcgacatgaacggaatcattcatccttgt
ttccatcctgaagacagggcttctccaacaacgttttcggaggtgtttcaatgcatgttc
gattacattgacagacttttcctcatggttcgacctcgcaagctattgtttttggctatt
gatggtgttgctccaagggctaagatgaatcaacaaagatccagaaggtttcgagctgca
aaagatgcagcagaggccgctgctgaagaagagcgactgcgtcaagagtttgagagtgaa
ggcaagaggttgcctcctaaactggactctcaagtttttgactctaatgttatcactcct
ggaaccgagttcatgtctactctttcctttgccttgcaatactacattcacgttagactt
aactctgaccctggctggaaaaatattaaggttatcctctcagatgctaatgttcctggt
gagggggaacacaagatcatgtcttacattcgtcttcaaaagaaccatcctggttacaac
cccaacgcctgtcattgtctgtatggtttggacgccgacttgattatgctggctttggcc
acacacgaagttcatatttcaatccttcgtgaggttgttttcactcctggacaacaagac
aaatgcttcttgtgcggtcagctcgggcaccgagctgcagattgtgaggggaagacagga
gatttgtctgataaagctgagtcagatgttgtggctaagaagccataccagttcgtcaat
atctggacgcttcgagagtatttggagcacgacatgcagatacctaactcgcaattgcaa
aaaaatttggaccgcataattgatgacttcatctttatctgtttttttgttggcaatgat
ttcctgccacatatgcctacactggagatacgggagggtgctatagaattacttatgtcc
gtgtacaagaaggaatttggatcaagtacaagttacttaagcaatggaagcaagctgaat
ttaaagaatgtggagcattttatccaggccgttgggctctatgaaaataatatatttcaa
agaagagcacaaaaccatcagaggcaatcggaaaggtttagtcgtgaccgagctaaatcg
agcagaaattgtaactatgacccggttgtgcaactagattctctagttgaagtgtccgat
tcattgcgtccgtctcttgacgataacactagtgtggaaacagagtataacatccaagaa
gaagtagataacagagaagaattgaagtttaagcttaagaaacttttgcgggaaaaatca
gatgggttcatttcagggaaaggcgaagaagataaggtgaggctaggtgtacaaggatgg
agggagagatactacgaggagaagttcatagctaagactatagaggaaatgaaacaaata
cgcagagatgttgttttgaagtatacagaaggtctttgttggataatgcattactattat
catggtgtttgttcatggaattggttttatccttatcattatgcacctttcgcatctgat
ctcaagttccttgataagctagatattaagttcgaactaggttccccatttaaaccattc
aatcagcttctggcagttcttccatctgcaagtgcacatgctctcccagaatgttttagg
aaactgatgacagatccaagttcacctatagctgagttttatcctcccgattttgagatt
gacatgaatggaaagcgctattcttggcagggtatagcaaaactgccttttatagaagaa
cagcgtcttctggatgcagccgcaaaagtggagcactcactgacgaacgaagaagttcga
agaaacagtgtgctgtctgacatgctctttgtggtttcatctcatccgcttgctgagctc
atccgttctcttagtagccgtactattaaattgagcaacaaagaacgagcagcagttacg
gaaaaaattgaccctggactaagtgaagggatgaatggttacttggctttatgtggtgga
gatagtcagccttcatgcttcagctcccccatcgaggggatggaagatgtattagccaat
caagtgatttgtgccatatacaaacttccagatgatcttagaggaagcgacattgctcgt
ccacctccaggagtggtgttgcctaaaaagactgtacaactagcggatttgaaaggtgga
gctaatctatggcatgaagatggtgatcgaagacgagctcctgcaaagattataaaaatc
aagaggtacaacccaaaaggatccatttcgggggttaggcttaggaaggcagcgcacaga
cttgtgttacagacgataagttcccaaccggataatacgcacatcaactccgaaccagca
ttgtgtccgaatactatattccacaacaatcaggtgtcgagaaatgtcccatcaccccga
gggagtgcggtgcagaggaaacaccctcagagtgaattagcgttgaagaaaaacagaatc
catcaaagtgaagtcaccgaggaggagaagacagcaatcagaaagcgtaaggaaaaggag
aaaagagggagatataaggctaacagaagggagagagcgaagaatgagcagcaagcaaac
aaaggagaaagcaatctggataacaaaaggcctcgaagtgaagtcaatgaggagaacaga
ctggaacacaaaaggcctagattcactgaggggaaggaacagaacacatgcgctcaaagc
gaactcactgaggagaagaatgccaaacgaaagcgtatggagaaggagaaaaaaagagaa
atttag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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