KEGG   Brassica rapa (field mustard): 103830166
Entry
103830166         CDS       T03449                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103830166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103830166
Enzymes [BR:brp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     103830166
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103830166
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103830166
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2
Other DBs
NCBI-GeneID: 103830166
NCBI-ProteinID: XP_009104150
UniProt: M4CGK9
Position
A07:complement(18673793..18677520)
AA seq 592 aa
MLSVIRVHLPSEVPIVGCELTPYVLLRRPDKTATTDDVPESAPLEGHFLKYRWYRVQSDK
KVAICSVHPSREATLQCLGCIKTKVPVTKSYHCSTKCFTDAWQHHRVLHERAAAEGNDEE
EELLRLNSSGSVSSILSTVSSLTNGSSSSVYPSAITQKTGAGGETLVEVGRSKTYTPMAD
DVGQVLKFECVVVNAETKQNVGHSCTILTSRVIPAPSPSPRRMIPVSGTVDSNGRPMSMG
SFTVLSYNILADAYASSEIYSYCPTWALSWTYRRQNLLREIVKYHADIVCLQEVQNDHFD
EFFAPELDKHGYQALFKRKTNEVFVGNTNTIDGCATFYRRDRFSHVKKYEVEFNKAAQSL
TEALIPVPQKKIALNRLVKDNVALIVVLEAKFGNQAADIPGKRQLLCVANTHVNISHELK
DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHSLLAVGKVDPMHPDLMVDPL
GILRPHTKLTHQLPLVSAYSSFARMGGSLTAEQQRRRMDPASNEPLFTNCTRDFIGTLDY
IFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMPKTRR
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgcttagcgttatacgagttcatctaccctcggaggtacctattgttggctgcgaactc
acaccttacgtgcttctccggcggccggataagaccgccaccaccgatgatgttccagag
tcagccccacttgaaggtcacttcttgaagtacagatggtatcgtgtacaaagcgataag
aaagttgctatttgtagtgtgcatccatccagggaggcgacattacagtgtctaggatgc
ataaagacaaaggttcccgtcaccaaaagctaccactgttcaactaaatgcttcacagac
gcgtggcagcatcaccgtgtgttgcacgagcgtgctgccgcggaaggaaacgatgaagaa
gaagagttgctccgtttgaacagttcaggctccgtctctagcatcctcagcaccgttagt
agtttaacaaacggttcatcgtcatcagtttatccctcagccataacccaaaagactggc
gcaggaggggaaacacttgttgaggttggacgctctaagacatacacaccgatggctgac
gatgttgggcaagttttgaagtttgagtgtgtagtggtcaatgcggagacaaaacagaac
gtgggccattcgtgtactatattgacttctcgtgttattccagctccatcaccttctccg
cgtaggatgatccctgttagtggaactgtggattctaatggccgacctatgtctatggga
tcattcactgtgctgtcctataatatattggctgatgcgtatgctagtagcgagatatac
agttactgccccacatgggctctttcgtggacataccgtagacagaatttattacgggag
attgttaagtaccatgcagatatagtttgtctacaggaggtacagaatgaccactttgat
gagtttttcgctcctgagctggataagcatggataccaagctcttttcaaaaggaaaaca
aatgaggtcttcgttggtaatacaaacacaattgatggatgtgctactttctacagaaga
gacaggttttctcatgttaaaaaatatgaggttgagttcaacaaggctgctcaatctttg
actgaggctcttattcctgtgccccagaagaaaattgctttgaatcgattggttaaggac
aatgtagcattaatagttgtcctggaagcaaagttcggtaaccaggctgctgatattcct
gggaagcgccagcttctttgtgtggctaacacacatgtaaacatttctcatgaattgaag
gatgtaaagctctggcaggttcacacattattgaagggactggaaaaaatagctgccagt
gcagatattccaatgcttgtgtgtggtgatttcaatacagtaccagcaagtgctcctcat
tcacttcttgctgtggggaaggttgatccaatgcacccagatttgatggttgaccctctt
ggaattttgcgtcctcacaccaaactaactcatcagctgccattggttagtgcttactcg
tcctttgcaagaatgggaggcagccttactgctgagcagcaaaggagaagaatggatcct
gcctcaaatgaacccttgtttaccaactgtaccagggatttcataggcacacttgattac
atattttacacagcggatacgctaacagtggaatccttattggagctgctggatgaagag
agcttgaggaaggacacggctcttccatctccagaatggtcttctgatcacattgcactt
ttggctgagttccgctgcatgcctaagaccagacgctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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