KEGG   Brassica rapa (field mustard): 103845854
Entry
103845854         CDS       T03449                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103845854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103845854
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103845854
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103845854
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965
Other DBs
NCBI-GeneID: 103845854
NCBI-ProteinID: XP_009120998
Position
A10:15566879..15572334
AA seq 836 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDSDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSISRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSLAAPVPAPQVRSISLPDDTTVLDSNSETLPKTPPAKN
GASLNSAPSTPVGGRSSLNVPVSNVPNAPVVLSTSIPVQTSTESMGSLSPVAAKEEDATT
LSSRKPPSSVADAPLRGIGRVSSPNQSQPSQPLSPSPANGARISATSAAEVAKRNIMGVE
SNVQPLSSPSKMVLSPAAKVNDGTASDSNPGDVAASISRAYSPSIVSGSQWRPGSPFQSQ
SETVRGRTEIAPDQREKFLERYQQVNHGNLLGMPSLSGGNEMQFSSQQQNPLLQQSSAMS
PHGSMGFQAPGFSVMSSASLQQPSNAMTQQLGQQPSVADVDHGRNDDQLQQNLPDDSSSL
AASKTIPNEDDSKGLFDTPSGMPSYMLDQVQVTRDGPDFSPGQPIQPGQPSSSLGVIGRR
SNSELGAIGDPSALGPMHDQMHNLQMLEAAYYRLPQPKDSERPRPYTPRNPAITPQTFPQ
TQAPIVNNPLFWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWF
QRHKEPKIATDEYEQGAYVYFDFQTPKDESQDGGWIQRIKNEFTFEYSYLEDELAV
NT seq 2511 nt   +upstreamnt  +downstreamnt
atgggtgcgagtcggaaattacaaggcgagatagatcgggtgctgaagaaggttcaggaa
ggcgttgatgtcttcgacagcatctggaacaagtggaatgtatatgattcagataatgta
aaccaaaaggagaagtttgaggcggacttgaagaaggagatcaagaagttgcagcggtat
agggaccagatcaagacttggattcagtctagtgagatcaaagataaaaaagtcagtgca
tcttatgagcagtccctggttgacgctcggaagctcattgagcgagaaatggagaggttt
aagatctgtgagaaagagaccaagactaaagccttctctaaggaaggactgggtcagcaa
ccgaaaactgacccaaaagagaaagcaaagtccgagacaagagattggttgaacaatgtg
gtgagtgaactagagtcacagattgatagctttgaagctgagttggaaggactatctgtc
aaaaaaggaaagacaaggccacccagactgacacatcttgaaacatctatttcaaggcac
aaagatcatataataaagttggaattgatcttgaggcttctggacaatgacgaactaagt
ccagaacaagtaaatgatgtcaaagattttctggatgattatgttgaacgaaatcaggat
gattttgacgaattcagtgatgttgacgagctgtatagcacgctgccgcttgatgaggtg
gagggtcttgaagatttagttactgctggcccccttgtcaagggtactcctctgagcatg
aagagttctttggcagcaccagtaccagcacctcaagttcggagcataagtttgccagat
gacacaactgtactggatagcaattcggagacacttccaaaaacccctcccgcaaagaat
ggcgcaagccttaactcagcaccatcaacacccgttgggggacgttcaagtttgaatgtt
cccgtcagtaatgttccaaatgcaccagttgtcttatcaacttctattcctgttcaaact
tccacggaaagcatgggaagtttgtctccagtggctgcaaaggaagaagacgcaacaacc
ttgtcttcccgtaaaccaccctcatctgttgctgatgctccattgaggggcattggtagg
gttagtagccccaaccagtcccaaccaagtcagcctctgtctcctagtcctgctaatgga
gctcgcattagtgctacttcagcagctgaagttgcaaagaggaatataatgggagttgag
agcaacgtccaacctctaagttctccgagcaaaatggtattgtcaccagccgcgaaggtt
aatgatggaactgcctctgatagcaaccccggtgatgttgcagcaagtatcagtagagca
tattcaccgtctattgtatctggttcgcagtggaggcctgggagtccctttcagagtcag
agtgaaacggtccgtggaagaactgaaatagcaccagatcaaagagagaaattcttagag
cggtaccagcaagtaaaccatgggaacctcttaggcatgccttctctatctggaggaaac
gagatgcagttttcttcacaacagcaaaatcctcttttacagcagagttctgccatgtct
cctcatggtagcatgggatttcaggcaccaggttttagtgtcatgagttctgcctcctta
cagcagccgtcaaatgccatgactcaacaattgggtcagcagccttctgtcgcagatgta
gatcatggcagaaatgatgatcagcttcaacaaaacttacctgatgattcatcttcctta
gcagcttcaaaaaccattccgaatgaggatgattctaaaggtctatttgatactccgtcg
ggaatgcccagctacatgttggatcaagtacaggtaactagggacggtcctgatttctct
cctgggcaacccattcaacccggccaaccttcaagcagcctcggtgtcattggacgtaga
agtaactctgaactaggagccattggtgacccttcagctttagggccaatgcatgatcag
atgcacaatctccagatgcttgaagctgcgtactatagacttcctcaacccaaagattca
gaacggcctagaccctatactccgaggaacccagcaatcacacctcaaacgtttccccaa
acacaagcgccaatcgtaaacaaccctttgttctgggaacgtttaggcagcgatgcttat
ggaaccgatactttgttctttgcattttattatcagcagaactcatatcagcagtatcta
gcggcaaaagagctgaagaaacagtcatggagataccacagaaagttcaacacatggttt
cagagacataaggagccaaagattgcaacggatgagtatgaacaaggagcctatgtttac
tttgatttccaaacccccaaagacgagagccaggacggaggatggattcaaaggatcaaa
aacgagttcacgtttgaatacagttatcttgaagatgaactcgccgtatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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