KEGG   Brassica rapa (field mustard): 103859161
Entry
103859161         CDS       T03449                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103859161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103859161
   03009 Ribosome biogenesis [BR:brp03009]
    103859161
Enzymes [BR:brp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103859161
Spliceosome [BR:brp03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103859161
 Complex B
    103859161
Ribosome biogenesis [BR:brp03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103859161
SSDB
Motif
Pfam: DEAD Helicase_C ResIII WW ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 103859161
NCBI-ProteinID: XP_009134902
UniProt: M4CAH1
Position
A03:complement(16228664..16233172)
AA seq 1052 aa
MATAEAAPASAGPRYAPEDPTLPKPWKGLIDGSSGVLYYWNPETNVTQYERPSPPLPAGA
PPKLAQIPVPSAGQQGHQAQLELGKPVGHVPQQHGLQQQPQQFPSQHGRPQMMQQQQHPG
QQMPQQSGQQFSQPQGQSMAPQPHGHPSQQTYQPTPQQQQQQQAMQNQHSQMPQQLSHQY
PHSQQQYMGYRPYMQQQGTQSSHQTPPQMGPQGQQFPSQQEYNSMPPKREGEEFHRGEKT
GFSQPHLQNSEASPSQNTAFEAKASSQRPNATQQYSGPQGNFQHPAAVTQFQQPGANLAH
QQLGPRPPHHMDQMLHQKSHASPFRSNNTYENNLQARPGNDSYGNTRMEGPMRGAQPRHP
AAMPEDIRIGGGPPAHADPAMGQTGHGPYGHAGPAFPTVGRPHFVTTPDGPHLSPVDSYR
KQHEITVTGENIPAPFITFESSGLPPELLRELLSAGFPSPTPIQAQTWPIALQNRDIVAI
AKTGSGKTLGYLIPAFTLLRHCRNDPRNGPTVLILAPTRELATQIQNEALRFGRSSRISC
TCLYGGAPKGPQLQELERGADIVVATPGRLNDILEMRKIDFQQVSLLVLDEADRMLDMGF
EPQIRKIVNEIPPRRQTLMYTATWPNEVRKIANDLLVNPVQVNIGSVDELAANKAITQYV
EVVPQMEKERRLEQILRSQERGSKVIIFCATKRLCDHLSRSVGRNFGAVVIHGDKSQGER
DWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGV
AFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGFNQDRRGMVNRFDSG
RGGSRWDSAGEFGGRGGGFGGRSGGFGMRDDSFGRGRGFPGPDGGRMNVGRGGFGRFGNN
NMDGRGFGRGGGGGGRGFSRGGGRFDNRRGRSRSRSPDLVRPRRSPSYSRSRSRSYSRSR
SRSWSRSRSRSPRRSGHKRSRSYSRSPSPVYERRDRRPRVSGFDIKPPAESVVNPDTVGT
AASETVVPAPLSERQGNGVVESEVEAALVDKP
NT seq 3159 nt   +upstreamnt  +downstreamnt
atggctacggcagaagcagctccagcttctgctggtccacgatacgctccagaggatccc
actcttcccaaaccatggaagggacttatcgatggaagcagcggcgttttgtattactgg
aatcctgaaacgaacgttactcaatacgaaagaccttctccacctttgccagctggtgct
cctccgaagctagctcagattcctgtaccttccgcaggacaacaaggacatcaagctcag
cttgagctaggaaagcccgttggtcatgtgcctcagcaacatggtttacaacaacagcct
cagcagttcccatctcaacatggaaggccccaaatgatgcagcagcagcagcatccggga
cagcagatgcctcaacaatcaggtcaacagttttcacaaccacagggccaatctatggcg
ccgcagccacatgggcatccttctcaacagacgtatcagccaacaccacagcagcagcag
cagcagcaagcaatgcagaaccagcattcacagatgcctcagcagctgagccatcagtat
ccacattcacaacaacagtacatgggttatcgtccttacatgcaacaacaagggactcaa
agttcacatcagacgccacctcagatgggtccccagggtcagcagtttccgagccagcaa
gagtacaactcaatgcctccaaagagggagggggaggagttccataggggtgagaaaact
gggttttcacaaccccatttacaaaattctgaagcttccccatctcaaaataccgccttt
gaggctaaggcatcatcacaaagaccaaatgcaactcagcaatacagtggacctcaagga
aactttcaacaccctgctgcagtcacacagtttcaacagccaggggctaatctggctcac
cagcagcttggacctaggcctccacatcacatggaccaaatgttgcaccagaagtctcat
gcttcccctttccgatctaataatacctatgagaataatctacaagctagacctggaaat
gactcctacggtaacacaagaatggaagggccgatgagaggtgcacagccacgccatcct
gcagcaatgcctgaggatataaggataggtggcggtccacctgcacatgctgatccggcc
atggggcagacagggcatggaccatacggacacgctggtccagcttttccaaccgtagga
aggcctcattttgtaacaactcctgatggtccccatctttcgcctgttgatagttaccga
aaacagcatgaaatcacagtaactggtgagaacattccagcaccattcatcacgtttgaa
tctagtggtctcccacctgaattacttagagagttgctttctgctggatttccatcacca
acaccgatccaggctcaaacatggccaattgctctgcagaacagggatatagttgcaatt
gcaaaaactggttctggtaaaacattgggatacttgatccctgccttcactcttcttagg
cactgtcgtaatgacccccgcaatggccccacggttttgatcttagctcctactcgggag
ctagctacacagatacaaaatgaagcccttaggtttggccggtcttccagaatatcatgc
acttgcttgtatggtggagctccaaagggtcctcaattgcaagaattggaacgaggagct
gatattgtggtggcaactcctgggcgcctaaatgacatactggagatgaggaagattgat
ttccaacaagtttccctccttgtgcttgacgaagcagatcgaatgcttgacatgggtttt
gaaccccaaatccgtaagattgtgaatgaaatacctccgcggagacagactcttatgtac
actgcgacttggccaaatgaagttaggaaaattgcaaacgatcttctcgtgaaccctgtc
caagttaacataggcagcgtagatgagttggctgcaaacaaggcgataacgcagtatgtt
gaagttgtcccacaaatggagaaggagaggcgtttggagcaaatccttaggtcgcaagaa
cgaggttcaaaagttataatattctgtgccacaaagaggctttgtgaccatctttcacgc
agcgttggacgtaattttggtgctgttgtaatccatggagacaaatctcaaggcgagaga
gattgggttcttaaccagttccgcagcgggaagtcgtgtgtgttgatagctactgacgtt
gctgcccgggggctcgatataaaagacataagagttgtgatcaactacgattttccaact
ggtgttgaagactatgtccatcgtatcgggagaactggtcgagctggtgcaactggagtt
gcattcactttctttacagagcaagattggaaatacgcacctgatttgatcaaagtcctg
gaaggagcaaaccagcaagtaccgcctcaagtgagggacattgcaatgcgtggtggtggt
ggtggtggtccgggttttaatcaggaccgaagaggcatggtaaaccgttttgactctggc
cgtggtggtagccgttgggattctgcaggtgagtttggtgggcgtggcggtgggtttgga
ggccgaagtggcggatttggaatgagagatgattcatttggacgtggtcggggttttcct
ggtcctgatggtggtcgtatgaatgtgggtagaggtggatttggtcggtttggtaataat
aatatggatggtcgaggctttggtcgtggtggtggtggtggtggtagaggctttagtcgt
ggtggtggacggtttgataacagaagaggtagaagccgtagcagaagtcctgatttggtt
aggccacgtcgtagcccgagctatagcaggagccgcagccggagctatagccgtagtcgt
agcaggagctggtcacgctcaaggagtcgtagccctaggcgtagtggtcataaacggagc
agaagctatagccgtagtcctagtccagtgtatgaaagaagggataggcgaccgcgtgtt
tctgggtttgatattaaaccaccagctgagtctgtcgtgaatccagacactgtaggaact
gctgcttctgaaaccgtggtccctgctccattgtctgaaagacaagggaatggtgttgtc
gagtctgaggtagaagcagctttagttgataagccctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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