KEGG   Brassica rapa (field mustard): 103862977
Entry
103862977         CDS       T03449                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103862977
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103862977
Enzymes [BR:brp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     103862977
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103862977
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103862977
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2 FTP
Other DBs
NCBI-GeneID: 103862977
NCBI-ProteinID: XP_009138955
UniProt: M4DDJ8
Position
A04:1647993..1652324
AA seq 600 aa
MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKTAATDDVPESAPLDGFFLRYRWYRVQSDK
KVTICSVHPTEQATLQCVFCSKRRALVAKSYHCSPKCFTDAWQHHKTLHERAAAENGNEE
DELTRFNSTGSGVLASTLSGSMSNLTLANNGPTPFYPSSITQKNGGETLIEVGGCKTYTP
TADDIGYVLKFECVVANAETKQFVGHPSTILTSRVIPAPSPSPRRLIPVNGADVMGHLDQ
DGRIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQ
EVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSVIDGCATFFRRDRFSHVKKYDVE
FNKAAQSLTEAIIPHTQKRTALNRLVKDNIALIVVLEAKFGNQPTDPSGKRQLICVANTH
VNVQQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHTLLVMGKVDPLH
PDLMVDPLNILRPHTKLTHQLPLVSAYTSFVRSVMGLGLEQHRRRMDLNTNEPLFTNCTR
EFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEFRCMPRTRR
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgctaagcgtgatccgagtgcatctcccttccgagattcctattgtgggctgtgagtta
actccttacgtccttgttcgccgccctgataagaccgccgccactgatgatgtccctgag
tcagctcctctcgatggcttcttcttgagatacagatggtatcgtgtacagagcgataag
aaagtaaccatttgcagcgtgcatccaacagaacaagccaccttacaatgtgtattctgc
tcaaagcgtagagccctcgtcgcaaaaagctaccactgctctcctaaatgcttcacagac
gcgtggcagcaccacaagactttacacgagcgagcagctgcagagaacggaaacgaggaa
gatgagctaactcggttcaacagcacaggctccggagttctcgccagcaccttatccggc
tcaatgtcgaatctcaccctcgccaacaacggccccacgccgttttacccttcaagcatc
actcagaagaacggaggagagacgctaatcgaggtcgggggttgcaaaacgtacacgcca
accgctgacgacattggctacgtgttgaagtttgagtgtgtcgtggctaatgcagagact
aaacagtttgtggggcatcctagtaccattttgacatcgcgtgtgattcctgcgccttct
ccgagtcctcgtaggcttatccctgttaatggagctgatgtgatgggtcatttggatcaa
gatggtcggattcagagtgcgggatcgttcactgttctttcttataatattttgtctgat
acttctgcaagtagcgacctttacagttactgtcctccttgggctctttcttggccgtac
agaagacagaatctgttgagggagattgttggttatcgtgctgatgtagtttgcctacaa
gaggtacaaagtgatcatttccatgagattttcgcaccggagttggataaacatgggtat
caagctctctacaagagaaagactaatgaggttctcagtggaagtacgagtgtaattgac
ggatgtgcaacgtttttcagacgggatagattttcacatgtcaagaaatatgatgttgag
ttcaataaggctgctcagtctttgactgaggctataatccctcatacgcagaagagaact
gctttaaaccggcttgtgaaggataacattgcgttgatagttgttcttgaagcgaagttt
ggtaatcaacctactgatccttcagggaagcgccagcttatctgtgtggcaaacacacat
gttaatgttcaacaagagctgaaggacgtgaagctctggcaggttcatactttattaaag
gggctagagaaaatagctgctagtgctgatattcctatgcttgtatgtggagacttcaat
acacttcccggaagtgctcctcatacacttcttgtaatggggaaagttgatccactgcat
ccagacttaatggttgatccccttaatatcctgcgtcctcatactaaactgactcatcag
ctacctttggtgagcgcttacacatcatttgtgagatcagtaatgggacttggattggaa
cagcacagaaggagaatggatcttaatacaaacgagcctttgtttactaattgtacaagg
gagttcattggcactcatgactatatattttatacagcggatactttgatggtggaatct
ttattggagttgctggacgaagatggattgagaaaggatacagctcttccttcacctgaa
tggtcttctaatcacattgcactcttggcggagtttcgatgcatgcctagaaccagacgc
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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