KEGG   Brassica rapa (field mustard): 103874464
Entry
103874464         CDS       T03449                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 3, chloroplastic
  KO
K16911  ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:brp03009]
    103874464
   03036 Chromosome and associated proteins [BR:brp03036]
    103874464
Enzymes [BR:brp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103874464
Ribosome biogenesis [BR:brp03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103874464
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    103874464
SSDB
Motif
Pfam: DEAD Helicase_C GUCT ResIII zf-CCHC CMS1 AAA_19 YgbB ERCC3_RAD25_C zf-CCHC_4
Other DBs
NCBI-GeneID: 103874464
NCBI-ProteinID: XP_009151140
UniProt: M4D0A2
Position
A06:complement(22783959..22787593)
AA seq 748 aa
MASTVGVPSLYQVPHLEFSKTTSKKRSTCLPLSLNKPFLSPFSLRRPRLIHSSSSLLIPS
AVATPNSVLSEEAFKSLGLSDEFDNTDPSPSDDDGEELAISKLGLPQRLGESLEKRGITH
LFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEQAGDYSAFRRPGRLAKFL
VLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQNALTRGVDVVVGTPGRIIDLIE
GRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPQKRQSMLFSATMPTWVKKLARKY
LDNPLNIDLVGDQDEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDA
DEVSLALSSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIH
YELPNDPETFVHRSGRTGRAGKEGSAILMHSSSQKRTVRSLERDVGCRFEFISPPTVGDL
LEASADHVVATLNGVHPESIKFFSATAQKLFEEKGTDALAAALAHLSGFSQPPSSRSLLS
HEQGWVTLQLIRDPTNARGFLSARSVTGFLSDVYRPAADRVGKIFMIADDRVQGAVFDLP
EDIAKELLENEVPEGNSLSLITKLPPLQDDGPSSDNYGRFSSRDRMPRGGGGSRGSRFGG
RGGSSSRGRDSWGGDDDRRGRSSGGGGSSWSRGGGSRGSSDDWLIGGGSDRRSSSSRAPS
RERSFGGACFNCGSSGHRAADCPDKRGF
NT seq 2247 nt   +upstreamnt  +downstreamnt
atggcgtcgacggtgggagttccatctctttaccaggtccctcacctggaattctccaaa
accacttccaagaagaggtctacttgcttacctctctctctcaacaaacccttcctctct
cccttctctctccgcagacctcgcctcatccactcctcctcctctctcctcatcccttct
gccgtcgccactcccaactccgttctcagcgaggaagccttcaaaagcctcggcctttcc
gacgaattcgacaacacggacccctccccctccgacgacgacggtgaagagctcgctatc
tccaaactcggtttgcctcagcgtctcggcgagtctcttgagaagcgtggtatcactcac
ctcttccccattcagagggctgtgttggttccggcactgcaaggacgagatatcatagct
cgtgctaagacaggaactggaaagactctggcttttggtatccctatcatcaaacgcctc
actgaacaagctggagactactctgcgttcaggaggcctggtcgtcttgctaagttcctt
gtccttgcgccgacgcgagagctggctaagcaagtggagaaggagattaaggagtctgcg
ccttatctaagcactgtctgtgtgtacggtggtgtctcttacaccattcagcagaatgct
ctcactcgtggtgttgatgttgttgttggaactcctggaagaatcattgatttgatcgaa
gggaggagcctcaagctgggcgaagttgagtacctggtgcttgatgaagctgaccagatg
cttgctgttgggtttgaggaggctgtggagtcgattcttgagaatctcccgcagaagaga
cagagcatgcttttctcggcgactatgcctacttgggtgaagaagttggcgaggaagtac
cttgataatcccttgaacattgatttggttggagaccaagatgagaagcttgcggaaggg
atcaaactgtatgcaatctcagccacttccacatcaaaacgcactattctaagcgacctt
ataacagtgtatgcaaagggtggcaagaccattgttttcacccaaacaaaaagagatgca
gacgaggtctctctagcattatcaagcagtatagcttccgaggcacttcatggtgatatc
tctcagcatcaaagagagagaacactcaacggtttccgccaagggaagttcacagttcta
gttgccactgatgttgcctctcgtgggcttgacatcccaaacgtagatcttgttatccac
tatgaacttcctaatgacccggagacctttgtgcaccgttctggtcgtactgggcgtgca
gggaaagaaggctctgccattctcatgcacagcagcagccaaaagagaaccgtgaggtct
cttgagcgtgacgtagggtgcagatttgagtttattagcccaccaaccgttggagacttg
ttggaagcgtcagcagaccatgtggtggccactctaaacggtgttcaccctgagtctatt
aagtttttctcagcaactgctcagaaactgtttgaggaaaaaggaacagatgctttagct
gcagctctggctcaccttagcggtttctctcagccaccttcttctagatctctcctcagt
catgaacagggatgggtgactttgcaattgataagagatccaacaaacgctagaggcttc
ctgtctgcaaggtctgtgactggttttctttcagatgtttaccgtccagctgcagatcga
gttgggaaaatcttcatgatcgcagatgacagggtgcaaggagctgtttttgatctacca
gaggacatcgcgaaagagctgctggagaatgaagtgccagaaggaaacagtttatccttg
ataacaaagttacccccgctgcaagacgatggaccgtctagtgataactatggacgtttc
tctagcagagacaggatgcctagaggaggaggaggctctagagggtcaagatttggcggt
agaggaggatcatcatcgcgaggacgtgatagttggggaggtgatgatgacagaagaggt
agaagcagtggtggtggaggaagcagctggtcccgtggtggtggttccagaggaagttct
gatgattggttgattggtggcggtagtgacagacgatcatcaagcagcagagctccttcc
cgggagaggagtttcggaggtgcttgcttcaattgtggaagttcaggacacagggcagca
gattgtcctgacaagagagggttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (10)   
All databases (25)   

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