KEGG   Bifidobacterium scardovii: BBSC_2061
Entry
BBSC_2061         CDS       T03975                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bsca  Bifidobacterium scardovii
Pathway
bsca03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bsca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BBSC_2061
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsca03021]
    BBSC_2061
   03400 DNA repair and recombination proteins [BR:bsca03400]
    BBSC_2061
Enzymes [BR:bsca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BBSC_2061
Transcription machinery [BR:bsca03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BBSC_2061
DNA repair and recombination proteins [BR:bsca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BBSC_2061
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Pentapeptide SF-assemblin
Other DBs
NCBI-ProteinID: BAQ32141
Position
complement(2478407..2482429)
AA seq 1340 aa
MLDVNAFDKLRIGLATAEDIRNWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIDLAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGHMAKRRDNEIEERAKKVEAD
LHELEEAGEASGSAKAKLRNSAEREMAAIRQRYDDQIQRLNAVFDRFKNLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIQKRLQDFDLEAAAKQLREEIDTGSGQRKARALKRLKVV
NAFLTTGNKPEAMVLTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQRLID
LKAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDMNYAQNMKSAKRMVDRG
DTEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLFWLSTISDGAKGQG
RIFSSLAETQMALDLHEIDMQAKVLIRLPKDFVLPTGWEPGEVKVVDPEPGSPDVAREER
FTDGTVLFATSMGRILFNEALPTDYPFVSEQAKKGVLSRIVNDISTRYSTAQVAATLDAL
KDLGFTKAPWSGVTFAFSDVTEPPARATLVAESEAQVSKINQQYDIGFFTEEERRQAIID
EWTKCTKKVSDAVEAHFDPKNNLSIIVQSGARGNMTQINQIAGIRGLVNNPKGEVIPRPV
ESNYRQGLSVLEYFISEHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LPMKVADRDENGNLTLVKAADGGPYSRLLSADVIDPADGETVLYKRGDALSMDVLRDLVA
HGVEEVKARSVLTCDSKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPIAEFSGVIKTDAEADHVYQMTLTPDDT
TVEPIVYTVNRRAPLLVKNGDHVDVGTKLTEGSVDPKKILRILGPRAAQVNIVNEVHTVY
REQGVDIHDKHIEVIVRQMLRRITVIDSGDTSLLPGELVDQARFKEANKEAVQNGGKPAA
GRPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGT
GLARYRNAVVEPDKAIRDTIYPNFGLGGGDDASADFSDADLSDVDFSNIDFGDLKLGDDF
NPDDFLDDQGGQDALGGDTL
NT seq 4023 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaacgcatttgacaaactgaggattggcctggccaccgccgaggatatt
cgcaactggagccacggcgaggtcaagaagcccgaaaccatcaactaccgtaccctcaag
cccgagaaggacggtctgttcggcgagcagatcttcggaccgacccgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgatgcggtgtg
gaggtcaccaagtcgcgcgtgcgccgcgagcgcatgggccacatcgacttggccgccccc
gtcacccacatctggttcttcaagggcgtgccgagccgcctcggctacctgctcgacatc
gcgccgaaggacctggagaaggtcatctacttcgcggcctacatggtcaccaaggtcgac
gaggaacagcgccatcaggatctgcccgacctgcaggacgagttcgacaccgagatcggc
cacatggccaagcgccgcgacaacgagatcgaggagcgcgccaagaaggtcgaagccgat
ctgcacgagctggaggaggccggcgaggccagcggctccgccaaggcgaagctgcgcaac
agcgccgaacgcgagatggcggccatccgccagcgctacgacgaccagatccagcgcctg
aacgccgtgttcgaccgcttcaagaacctgaagcccggcgacatggaaggcgacgtggac
ctgtggcgcgagatggaggaccgctacggcgattacttcgagggctgcatgggcgctgag
gcgatccagaagcgcctgcaggacttcgacctcgaggccgcggccaagcagctgcgcgag
gagatcgacaccggttccggccagcgcaaggcccgcgcgctcaagcgcctgaaggtcgtc
aacgccttcctgaccaccggcaacaagcctgaggccatggtgctcaccgtgatcccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggcggccgcttcgctacctccgac
ctcaacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgcagcgtctgatcgac
ctcaaggcccccgagatcatgctcaacaacgagaagcgcatgctgcaggaggccgtcgac
tcgctgttcgacaacggccgccgcggccgcccggtcaccggcgcctcgaaccgcccgctc
aagtccctgtccgacatgctcaagggcaagcagggccgtttccgccagaacctgctcggc
aagcgcgtcgactactcgggccgttccgtgatcgtcgtcggcccgtcgctgcgcatgcac
cagtgcggcctgcccaagccgatggccctcgagctgttcaagcccttcgtcatcaagcgc
ctggtcgacatgaactacgcgcagaacatgaagagcgcgaagcgcatggtcgaccgcggc
gacaccgaggtgtggggtgtgctcgaggaggtcatctccgagcatcccgtgctgctcaac
cgcgcgcctacgctgcaccgtctgggcatccaggccttcgagccgatcctggtcgaaggc
aaggccatccacctgccgccgctcgcctgcgccgcgttcaacgccgacttcgacggcgac
caaatggccgtccacctgccgctgagcgccgaggcgcaggccgaggcacgttcgctgatg
ctcgcctccgacaacatcctcaagcccgccgacggccacaccgtgaccatgccttcgcag
gacatgatcctgggcctgttctggctgtccaccatcagcgatggcgccaagggccagggc
cgcatcttctcctcgctggccgagacgcagatggcgctcgacctgcacgagatcgacatg
caggccaaggtgctgatccgcctgccgaaggacttcgtgctgccgaccggctgggagccg
ggcgaggtcaaggtcgtcgacccggagccgggcagcccggacgtggcgcgcgaggaacgc
ttcacggacggcaccgtcctgttcgccacctcgatgggccgcatcctgtttaacgaggcg
ctgccgaccgattacccgttcgtcagcgagcaggccaagaagggcgtcctgtcccgcatc
gtcaacgacatctccacccgctactcgaccgcccaggtggcggcgacgctggatgcgctc
aaggaccttggcttcaccaaggccccgtggtcgggcgtcaccttcgcgttctccgacgtg
accgagccgccggcccgcgccacgctggtcgccgagtccgaggcgcaggtcagcaagatc
aaccagcagtacgacatcggcttcttcacggaggaggagcgtcgccaggcgatcatcgac
gagtggaccaagtgcaccaagaaggtgtccgacgcggtcgaggcccacttcgatccgaag
aacaacctgtcgatcatcgtccagtccggtgcgcgaggcaacatgacccagatcaaccag
atcgcgggcatccgtggcctagtgaacaacccgaagggcgaggtcatcccccgaccggtc
gagtcgaactaccgtcagggcctgtccgtcctcgagtacttcatctccgagcacggcgcg
cgcaagggtctggccgataccgcgcttcgtaccgcggagtcgggctacctgacccgtcgt
ctggtcgacgtctcgcaggacgtgatcgtgcgcgaggaggactgcggcaccaagcgcggc
ctgccgatgaaggtcgccgaccgcgacgagaacggcaacctgacgctcgtcaaggccgcc
gacggcggtccgtactcgcgtctgctgtccgccgacgtgatcgacccggccgacggcgag
accgtgctgtacaagcgcggcgacgccctgtcgatggacgtgctccgtgatctcgtggcg
cacggcgtcgaagaggtcaaggcccgctccgtgctcacctgcgattccaagcgcggcgtg
tgcgcgaagtgttacggctggtcgctggccaccaacaagctcgtcgacgtcggcgaggcc
gtcggcatcgtcgcggcccagtccatcggcgagcccggcacccagctgacgctgcgttcc
ttccactccggcggcgtcgcggcggcttccgatatcacgcagggtcttccccgtgtcacc
gagcttttcgaagcccgtaccccgaagggcgaagcgcccatcgccgagttctccggcgtg
atcaagaccgatgcggaagccgaccacgtctaccagatgacgctgaccccggacgacacg
accgtcgagccgatcgtctacaccgtgaaccgccgcgctccgctgctggtcaagaatggc
gatcacgttgacgtcggcacgaagctgaccgaaggttccgtggatcccaagaagatcctg
cgcatcctcggcccgcgcgccgcccaggtcaacatcgtgaacgaagtgcacaccgtgtac
cgtgagcagggcgtggacatccacgacaagcacatcgaggtcatcgtgcgccagatgctg
cgccgcatcaccgtcatcgactccggcgacacgtcgctgctgccgggcgagctggtcgac
caggcgcgcttcaaggaagcgaacaaggaggccgtgcagaacggcggcaagccggccgcc
ggccgccccgagctcatgggcatcaccaaggcctcgctggccaccgactcgtggctgtcc
gccgcctccttccaggagacgacgcgcgtgctcaccgaagccgccctgagccagaaggtc
gacgacctcaagggcctcaaggagaacgtgatcatcggcaagctgatcccggccggcacc
ggcctcgcccggtaccgcaacgccgtggtcgagcccgacaaggcgattcgcgacaccatc
tacccgaacttcggcttgggtggcggcgacgacgccagcgcggacttctccgatgccgac
ctgtccgatgtggacttctccaacatcgacttcggcgacctgaagctcggcgacgacttc
aacccggacgacttcctcgacgatcagggaggccaggacgcgctcggcggcgacacgctg
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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