KEGG   Bacillus subtilis subsp. subtilis 168: BSU06730
Entry
BSU06730          CDS       T00010                                 
Symbol
yefA
Name
(RefSeq) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
bsu  Bacillus subtilis subsp. subtilis 168
Brite
KEGG Orthology (KO) [BR:bsu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:bsu03009]
    BSU06730 (yefA)
Enzymes [BR:bsu01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     BSU06730 (yefA)
Ribosome biogenesis [BR:bsu03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    BSU06730 (yefA)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Met_10 Methyltransf_25 Methyltransf_15 PrmA MTS RrnaAD Methyltransf_11 Cons_hypoth95 N6_N4_Mtase Methyltransf_23 TPMT Methyltransf_32 Methyltransf_12 Ubie_methyltran PCMT
Other DBs
NCBI-GeneID: 936060
NCBI-ProteinID: NP_388555
Pasteur: BG12826
UniProt: O31503 A0A6M3Z867
Position
737603..738982
AA seq 459 aa
MKMKPPVEKNEYYDVTFEDLTHEGAGVAKVQGFPIFVPNALPEEKAQIKVTRVKKGFAFG
RLIELKEESPHRTDAPCPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVT
VHPTLGMEDPWNYRNKAQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAV
KDICANYGVKAYNEERHKGWLRHIMVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF
PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLY
DKALEYAELQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTN
AEFAVGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTL
ARDLRVLEDGGYVTREVQPVDMFPHTNHVECCVLIKLKE
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgaaaatgaaacccccagtagaaaaaaatgaatactacgatgtgacatttgaggatttg
acacatgaaggagcgggcgtcgcaaaggtccaaggcttcccgatctttgtgccgaatgcc
ctacccgaggaaaaagcccaaatcaaagtgacacgcgtcaaaaaagggttcgccttcggc
cgcctgattgagctgaaggaagaaagcccgcatagaacggacgccccatgcccgatttac
aaacaatgcggaggctgccagcttcagcacatgacctacgaaggccagctcctgtttaaa
cagaaacaagtcaaagacgtcttagaacgcatcggcaagctggacctttcaaaagtcacc
gtgcacccgacactcggcatggaagacccgtggaactacagaaacaaagcacaggtgccg
gtaggagaacgggaaggcggactcgtcgcgggattctatcagcaaagaagccatgacatc
atcgacatgagcgcctgcctgatccagcaatccaaaaacgacgaagccgttcaagctgtc
aaagacatttgcgcaaactacggtgtcaaagcctacaacgaagaacgccacaaaggctgg
ctccgccacatcatggtcagatacggcgttgttacgggcgaaatgatgatcgtcttcatc
acaagaacaagcgacttcccgcacaaagcgaagatcatcgaagacatcacagcgcaattc
ccgcacgtcaaatccatcgtgcaaaacatcaacccaaacaaaacaaacgtcatttttggc
aacgaaacaaacgtcatctggggcgaagaatacatctacgacctcatcggagacgtcaaa
ttcgccatctccgccagatcgttttatcaggtcaacccagagcaaacaaaagtgctctac
gacaaagcgcttgagtacgctgagcttcaaggggaagaaaccgtcatcgacgcttactgc
ggcatcggaacgatttctctcttcctggcaaagcaggcgaaaaaagtgtacggtgtagag
attgtgccggaagcaattgaggacgcgaagcgaaacgccgaattaaacggcaacacaaac
gcagagtttgctgttggagaagcggaaaccgtgattccaaagtggtacgaagaaggcatt
acagctgatacgctggtcgtcgacccgccaagaaaaggctgcgacgaagccctcctgcgg
acaattgtggagatgaagccgaagcgggtagtgtatgtgtcctgtaatcctggcacgctt
gcgagagatttgcgggtgcttgaggatggcgggtacgtgacgcgcgaagtgcagcctgtg
gatatgtttccgcatacgaatcatgtggagtgctgtgtgttgataaaattaaaagaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PASTEUR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (41)   

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