KEGG   Bacillus subtilis subsp. subtilis JH642: BSUA_01865
Entry
BSUA_01865        CDS       T03443                                 
Symbol
ymaH
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
bsul  Bacillus subtilis subsp. subtilis JH642
Pathway
bsul02024  Quorum sensing
bsul03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bsul00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSUA_01865 (ymaH)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BSUA_01865 (ymaH)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bsul03019]
    BSUA_01865 (ymaH)
   03036 Chromosome and associated proteins [BR:bsul03036]
    BSUA_01865 (ymaH)
Messenger RNA biogenesis [BR:bsul03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BSUA_01865 (ymaH)
Chromosome and associated proteins [BR:bsul03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BSUA_01865 (ymaH)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AIC40151
Position
1850923..1851144
AA seq 73 aa
MKPINIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESEGKQQLIYKHAIS
TFAPQKNVQLELE
NT seq 222 nt   +upstreamnt  +downstreamnt
atgaaaccgattaatattcaggatcagtttttgaatcaaatccggaaagaaaatacgtat
gtcactgtttttttgctgaacggctttcagttgcggggccaggtgaaaggctttgataac
tttaccgtattgttggaatcggaaggtaagcagcagcttatatataaacatgcgatctca
acgtttgcgccgcaaaaaaacgtccagcttgaactcgaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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