KEGG   Brucella suis ZW043: IY71_13965
Entry
IY71_13965        CDS       T03426                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
bsw  Brucella suis ZW043
Pathway
bsw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bsw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    IY71_13965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsw03400]
    IY71_13965
Enzymes [BR:bsw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     IY71_13965
DNA repair and recombination proteins [BR:bsw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      IY71_13965
SSDB
Motif
Pfam: TRCF DEAD Helicase_C UvrB_inter CarD_TRCF_RID ResIII UB2H RecG_dom3_C AAA_22 NitrOD2
Other DBs
NCBI-ProteinID: AIN85866
Position
2:complement(561370..564882)
AA seq 1170 aa
MPVFSKLGLKPGAIANKGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQRIAD
LEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPAVILTT
ANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGEYAVRGGIL
DLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLSSDMISRFRK
NYVATFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGPMPVVFDHLVHEA
LTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEEAAEAAGLRIDLT
PFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEG
SLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAGDLVVVAEQDILG
DRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRYGLEGSDAVLDKLGGGAWQARKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKT
EVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAAT
KKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
VPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLTQMAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGSGEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAELIDRFGPMPDEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWPTPEKRLNGSAVIMTQLAKIAAA
NT seq 3513 nt   +upstreamnt  +downstreamnt
atgcccgttttcagcaaactcggtctcaagcccggcgcgatcgcgaataaggggcgccat
atcgtcattgacggtgttgcggacggttttgaggcgttctgccttgcgcgtctggtggaa
gagatcggggagcgcgggccgatcatgtatatcgtgcgcgacgggcagcgcattgccgat
ctggagcaggtgttgggtttcgtttcgcccgatctgccggtgctgcacctgcccgcctgg
gattgcctgccttatgaccgcgtgtcgccaggggcggatgctgcagcgcgcagacttgcg
gcgctcagcgcgctttgcgcactgaagaaagcaccgcatccagccgtcattctcaccacg
gccaatgccgtgctgcaaaaattgccgccgcaggccgcacttggcgaacaggtgatctca
gcgcgccccggcaaccagctcgacatgaacgatcttgccgcacggctggagcgcaacggc
tttgagcgtgtctctaccgtgcgcgacatcggcgaatatgcggtacgcggcggcattctc
gatctttatgcgccgggagcggaagaaccgctgcggcttgattttttcggcgatacgctg
gaaacgatccgtgccttcgatcccgcctcccagcgcaccaccggcacccgaaaggaattc
gtgcttcagccgatgagcgaaatcacgctctcgtccgacatgataagccggtttcgcaag
aattatgtggccacgttcggcgcgccgcagcgtgacgatgcgctttatcaggccatcagc
gaaggccgccgttttgctggcatggaacattggctgccgcttttctatgacaatctagag
acagttttcgaccatgccgggccaatgccggtcgtgttcgaccatctggtgcatgaggcg
ctgaccgagcgccacaccatggttgtggaccattacgaagcgcgactgcggcaggcggag
ggcaaagaggcgggcagcgatgccgtgccttacaagccggtaaagccggaaatgctctat
cttacgccgggccaggttgaagaagccgccgaggccgctggcctgcgtattgaccttacg
ccattcggcgcgccggaggtttccggccggaccattattcatgccgatgtgcacaagggc
cgcagctttgccgaggagcgcgccgcaaccgacgtgaacctgtttgaagccgtggtgaaa
catattgcagacctgcgcgcctccggcaaaaaggttctggttgccgcctggaccgaaggt
tcgctcgaccggctctgtcaggttctggacgaacacgggcttgaaaaaatagagaccgtc
gataggctttccaccgtcaaggccctgtcgcgcgacaaggtgacggcggcggtgctggcg
gtcgaaagcggcttcgatgcgggcgatctggtggtcgtggcggagcaggatattctgggc
gacaggctcatccgccgctccaggcgccgcaagcgcgatcaggatttcatctcggaagtc
gcctcgctgacggctggcgatatcgtcgtccatgtcgatcacggcattgggcgctttatc
ggcctcaagacgattactgcggcaggcgccccgcatgactgccttgaaatccattatgcg
ggcgatgaccgcctgtttctgccggttgagaatatcgagcttctgtcgcgctatggcttg
gaagggtccgatgcggttctcgacaagctgggcggtggcgcatggcaggcgcgcaaggca
aaactcaagaaacggcttctggaaattgccggccatctgatccagattgccgccgaacgc
cagatgcgcggtgcgcctgtgatgacgccgccggacggtctttatgcggaatttgccgcg
cgctttccctatgatgagactgacgaccagttgacggcaatcgaggccgtggcggatgat
cttgcgcaaggcaagccgatggatcgcctcatctgcggcgatgtcgggttcggcaagacg
gaagtggcgctgcgcgccgccttcatcgccgcgatgagcggcgttcaggtggcagtggtc
gtgccgaccacgcttctttcgcgccagcatttcaagaccttctccaaccgctttcacggc
ctgccgatcaatgtggcccacgcctcacgcctcgtcggcgcgaaggagctggccgccacc
aaaaaggggctggaagagggaacggtcgatattgtcgtcggcacacacgcgcttttgggc
agctccatcaagttcaagaatctcggccttctcattatcgatgaggagcagcatttcggt
gtgaagcacaaggaacggctgaaggaactgaaatccgacgtccatgtgctgaccctttcg
gccacgccgatcccgcgcaccctgcaacttgcgctgaccggcgtgcgcgaactttcgctc
atcaccacgccgccggtggaccgcatggcggtgcgcaccttcgtctcgccattcgatccg
ctcgtgatccgcgaaacccttttgcgtgaacgctatcgcggcggccagagcttctatgtc
gtcccacgcatagccgacctcacggatattgaagaattcctgaaggagcatgtgccggaa
ctgaaagtggccgtggcccatggccagatggcgccgggtgtgctggatgacatcatgaat
gccttctatgacgggcagtatgatgtgcttctttccacaaccatcgtggaatcgggcctc
gatattccaaccgccaacaccatgatcgtgcatcgtgccgatatgttcgggctggcgcaa
ctctatcagttgcgcggccgcgtgggccgctccaagcagcgcgctttcgcgctgttcacg
ctcccggcgggcaagatgctgacgcagatggccgaacgccgtctgaaagtgctgcaatcg
ctcgacacgcttggcgcgggcttccagcttgcaagccacgacatggatattcgcggcgca
ggcaatctgctgggcgaggaacagtcgggccacatcaaggaagtgggcttcgagctttac
cagcaaatgcttgaagaagcggttgcgacgctgaagggctccggcgaagtggaagacagc
cagtggtcgccgcagatcgccattggtacggcggtcatgatcccggaagcctatgtgccc
gacctgcaattgcgccttggcctttatcgccgtctggccgatctggaagagccgcaggat
atcgatgcctttggtgcggaactcatcgaccgtttcggcccgatgcccgacgaagtgcag
catcttctcaagatcgtctatatcaaggcgctctgccgccgcgccaatgttgagaaactc
gatgccgggccgaagggcgtggttatccagttccgccacgcgaccttcaacaatccggtc
ggtctggtaaaaatgatcggcgagcaggggtccatggcgaagatcaggccggaccagagc
atcgtcttcatccgcgattggccgacaccggaaaagcgcctcaacggctccgccgtcatc
atgacacagcttgcaaagattgcggcggcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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