KEGG   Bos taurus (cow): 100301114
Entry
100301114         CDS       T01008                                 
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X6
  KO
K12821  pre-mRNA-processing factor 40
Organism
bta  Bos taurus (cow)
Pathway
bta03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100301114 (PRPF40A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bta03041]
    100301114 (PRPF40A)
Spliceosome [BR:bta03041]
 Complex A
  U1 snRNP components
   U1 related factors
    100301114 (PRPF40A)
 Complex B
    100301114 (PRPF40A)
SSDB
Motif
Pfam: FF WW
Other DBs
NCBI-GeneID: 100301114
NCBI-ProteinID: XP_002685399
Ensembl: ENSBTAG00000048151
VGNC: 33379
UniProt: G3MXT3
Position
2:43470302..43528881
AA seq 929 aa
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ
MMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWT
EHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKES
RWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTT
MSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVSGTVPVVPEPEVTSIVATVVD
NENTVTISTEEQAQLTSTPSVQDQSEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTY
TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT
EKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIY
EDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEE
LQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLH
SMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGF
VVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKES
AFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHH
SKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKK
SKKHKKKSKKRRHKSDSPESDAEREKDKKEKDREGEKDRTRQRSESKHKSPKKKTGKDSG
NWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq 2790 nt   +upstreamnt  +downstreamnt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagccgagcgtggaggcctcatgatggggcatcctggcatgcattatgccccaatggga
atgcatcctatgggtcagagagcgaatatgcctcctgtacctcatggaatgatgccacaa
atgatgcccccaatgggaggaccaccaatgggacaaatgcctggaatgatgtcttcagta
atgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgccttaccgcca
ggagtaaataatatggatgtagcagcaggtacaacttctggcgcaaaatcaatgtggact
gaacataaatcacctgatggaaggacctactactacaatactgaaacaaaacagtctact
tgggagaaaccagatgatcttaaaactcctgctgagcaacttttatctaaatgcccttgg
aaggagtacaagtctgactctggaaagccttattattacaattctcaaacaaaagaatct
cgctgggccaaacctaaagaacttgaagatcttgaaggataccagaataccattgttgct
ggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagcagtaaa
caagaagagtgcaccacaacatcagcagccccagttcctacaacagaaattccaaccaca
atgagcaccatggctgctgcagaagcagcagctgctgttgttgcagcagcagccgcagca
gcagcagctgctgctgcagccaatgccagtgcttccacttctgcctctagtactgtcagt
ggaactgttccagttgttcctgagcctgaggttacttcgattgttgctactgttgtagat
aatgaaaatacagtaacaatttctactgaagaacaagcacaacttactagtaccccttct
gttcaggatcaaagtgaagtgtctagtaatactggagaagaaacatctaagcaggaaact
gtagctgattttactcccaaaaaagaagaggaagaaagccaaccagcaaaaaaaacgtat
acgtggaatacgaaagaggaggcaaagcaagcatttaaagaattattaaaagaaaagcgt
gtaccatctaatgcttcatgggagcaagctatgaaaatgatcattaatgatccacgatat
agtgctttagcaaagttgagtgaaaaaaagcaggcctttaatgcttataaagtccaaaca
gagaaagaagaaaaagaagaagcaagatccaaatacaaagaggctaaggaatcctttcag
cgttttcttgagaatcatgaaaaaatgacttccacaactagatacaaaaaagcagagcaa
atgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaaatctat
gaagatgttttattctttctttcaaaaaaagaaaaggagcaagcaaagcagttgcgaaag
aggaattgggaagccttaaaaaacatacttgacaacatggctaatgtgacatattctact
acttggtctgaagcccagcagtatctgatggataatccaacttttgcagaagatgaggaa
ttacagaatatggataaagaagatgcattaatttgctttgaggaacacattcgagcttta
gaaaaggaagaggaagaagaaaaacaaaagagtttgcttcgtgaaaggagacgacagcgt
aaaaatagagaatcttttcagatatttttagatgaactgcatgaacatggacaactgcat
tctatgtcatcttggatggaattgtatccaacaattagttctgacattagattcactaat
atgcttggtcagccgggatcaactgcacttgaccttttcaagttttatgttgaggatctt
aaagcacgttatcatgatgaaaagaagataataaaagacattctgaaggataaaggattt
gtagttgaagtaaatactacttttgaagactttgtggcaataatcagttcaactaaaaga
tcaaccacattagatgcaggaaatattaagctggctttcaatagtttactagaaaaggca
gaagcccgtgaacgtgaaagagaaaaagaggaggctcggaagatgaaacgaaaagaatct
gcatttaagagtatgttgaaacaagctactcctccaatagaattggatgctgtctgggaa
gatatccgggagagatttgtaaaagagccagcatttgaggatataactctagaatctgaa
agaaaacgaatatttaaagattttatgcatgtgcttgagcatgaatgtcaacatcatcat
tcaaaaaacaagaagcattctaagaaatctaaaaaacatcacaggaagcgctcccgctct
cgatcagggtcagattcagatgatgatgacagccattcaaagaaaaaaagacagcgatca
gagtctcgttctgcttcagaacattcttctagtgctgaatctgagagaagttacaagaaa
tcaaaaaaacataagaagaaaagcaagaagagaagacataaatcagactctccagagtca
gatgctgaaagagaaaaggataaaaaagaaaaagaccgggaaggcgaaaaagacagaact
agacaaagatcagaatcaaaacacaaatcacctaagaaaaagactggaaaggattctggt
aattgggatacttctggcagtgaactgagtgaaggagaattggaaaagcgcagaaggacc
cttttggagcaactggatgatgatcaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (12)   
   RefSeq(nuc) (10)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (53)   

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