KEGG   Bos taurus (cow): 506557
Entry
506557            CDS       T01008                                 
Symbol
PBRM1
Name
(RefSeq) protein polybromo-1
  KO
K11757  protein polybromo-1
Organism
bta  Bos taurus (cow)
Pathway
bta03082  ATP-dependent chromatin remodeling
bta05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    506557 (PBRM1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    506557 (PBRM1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bta03021]
    506557 (PBRM1)
   03036 Chromosome and associated proteins [BR:bta03036]
    506557 (PBRM1)
Transcription machinery [BR:bta03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     506557 (PBRM1)
Chromosome and associated proteins [BR:bta03036]
 Eukaryotic type
  Chromatin remodeling factors
   PBAF complex
    506557 (PBRM1)
SSDB
Motif
Pfam: Bromodomain BAH HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 506557
NCBI-ProteinID: NP_001291941
Ensembl: ENSBTAG00000014786
VGNC: 32606
UniProt: A0A3Q1LHD2
Position
22:48176080..48283003
AA seq 1703 aa
MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSSLPTVDPIAVCHELYNTIRDY
KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
NNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDSQGAVTEGSSPG
YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHEMTKSSLRMRT
SSNLAATRLTGPSHSKGSLGEERNPTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAAL
AAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFFHLPSKKKYPDYY
QQIKTPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQ
AKKKELARRDDIEDGDSMISSATSDTGSAKRKRSTLDSEMLGLRRLSSKKNIRKQRMKIL
FNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGM
IEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKLSRKSG
ISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDM
EKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGD
EDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPSFPNKPPLTFDIIR
KNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEIL
LSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHRT
YSQDCSFKNSMYHVGDYVYVEPSEVNLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFH
LATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAK
TKSFKKIKLWTMPVSSVRFVPRDVPLPVVRVASVFANADKADDEKNTDNSEDSRTEDSCN
LEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVRD
GAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCRP
TEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQKEPSPLLE
KKIQLLEAKFAELEGGDDDIEEMGEEDSEVIEPPSLPQLQTPLASELDLMPYTPPQSTPK
SAKGSAKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKKA
EYEERAAKVAEQQERERAAQQQQPSASPRAGTPVGALMGVVPPPTPMGMLNQQLTPVAGM
MGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAPM
VGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLLH
SEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADAL
WRLRDLMLRDTLNIRQAYNLENL
NT seq 5112 nt   +upstreamnt  +downstreamnt
atgggttccaagagaagaagagctacctccccttccagtagtgtcagtggggactttgat
gatgggcaccattctgtgtctacaccaggcccaagcaggaaaaggaggagactttccagt
cttccaactgtagaccctattgctgtgtgccatgaactctacaacaccatccgagactat
aaggatgagcagggcaggctcctctgtgagctcttcattagggcaccaaaacgaagaaat
caaccagactattatgaagtggtttctcagcccattgacttgatgaaaatccaacagaaa
ctaaaaatggaagagtatgatgatgttaatctgcttactgctgacttccagctgcttttt
aacaatgcaaaggcctattataagccagattctcctgaatataaagctgcttgcaaactc
tgggatttgtaccttcgaacaagaaatgagtttgttcagaagggagaagcagatgacgaa
gatgatgatgaagacgggcaagacagtcaaggcgcagtgacggaaggatcttctccaggt
tacttgaaggagatcctggagcagcttcttgaagccatagttgtagccacaaatccatca
ggacgtctcataagcgaactttttcagaagctgccttctaaagtgcaatatccagactat
tatgcaattattaaggagcctatagatctcaagaccattgcccagaggatacagaatgga
agctacaagagtattcacgcaatggccaaagatatagatctcctagcaaaaaatgccaaa
acttacaatgagcctggttctcaagtgttcaaggatgcaaattctattaaaaaaatattt
tatatgaaaaaggcagaaattgaacatgaaatgacaaagtcaagccttcgaatgaggact
tcatcaaatttggctgcaaccaggctgacaggtccttcgcacagtaaaggcagccttggt
gaagagagaaatcccactagcaagtattaccgtaataaaagagcagtccaagggggtcgt
ttatctgcaattaccatggcacttcagtatggctcagaaagtgaagaggatgctgcttta
gctgctgcgcgatatgaagaaggagaatctgaagcagagagcattacttcatttatggat
gtttcaaatcctttttatcagctttatgacacagttcggagctgtcggaataaccaaggc
cagctaatagctgaaccttttttccatttgccttcaaagaaaaaatatcctgattattat
cagcaaattaaaacacccatatcactacaacagatcagaacaaagctaaaaaaccaagaa
tatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgccaaacgc
tataatgttcccaactcggccatctacaagcgagttctgaaactgcagcaagtcatgcag
gcaaagaagaaagagcttgctaggagagacgacattgaggatggagacagcatgatttct
tcagccacctctgatactggtagtgccaaaagaaaaaggagcactcttgacagtgagatg
ttgggtctcaggaggctctccagtaaaaagaacataagaaagcagcgaatgaaaatctta
ttcaatgttgttctcgaagctcgtgagccaggctcaggcagaagactttgtgatctattt
atggttaaaccatccaaaaaggactatcctgattattataaaatcatcttggagccaatg
gacttgaaaataattgagcataacatccgcaatgacaaatatgcgggggaggagggaatg
atagaggacatgaagctgatgttccggaacgccaggcactacaacgaggagggctcccag
gtgtacaacgatgcacacatcctggagaagttactcaaggataaaaggaaagagctgggc
ccactgcctgatgatgatgacatggcatctcccaaactcaagctgagtaggaagagtggt
atttctcctaaaaaatcaaaatacatgactccaatgcagcagaaactaaatgaagtctat
gaagctgtaaagaactatactgataagaggggtcgccgcctcagtgccatatttctgagg
cttccctccagatccgagctgcctgactactatttgaccattaaaaagcccatggacatg
gaaaaaattcgaagtcacatgatggccaacaaataccaagatatagactccatggttgag
gacttcgtcatgatgtttaacaatgcctgtacatacaatgagcccgagtctttgatctac
aaagatgcccttgtcctacacaaagtgctgcttgaaactcggagagacttagaaggagat
gaggactcgcatgtcccaaatgtaaccttgctgattcaggagcttatccataatcttttt
gtgtcagtcatgagtcatcaggatgatgaaggaagatgctacagtgattccttagcagaa
attcctgctgtggatcccagctttccaaacaaacctcctcttacttttgacataattagg
aagaatgttgaaaataaccgctaccgacggcttgatttatttcaagagcatatgtttgaa
gtattggagagggcaagaaggatgaatcggacagattctgaaatatatgaggatgcggta
gaacttcagcagttttttattaaaattcgtgatgaactctgcaaaaatggagagatcctt
ctttcaccagcactcagctataccacaaaacatttgcataatgatgtggagaaagaaaag
aaggaaaaactgccaaaagaaatagaggaagataaactaaaacgagaagaagaaaaaaga
gaagctgaaaagagtgaagattcctcaggagctgcaggcctctcaggcttacatcgcaca
tacagccaggactgcagctttaagaacagcatgtaccatgttggagattacgtctatgtg
gagccctcagaggtcaatctacaaccgcatatcgtctgtattgagagactgtgggaagat
tctgctggtgaaaaatggttgtatggctgttggttttatcggccaaatgaaacattccat
ttggctacacggaaatttctagaaaaagaagtttttaagagtgactattacaataaagtt
cctgttagtaaaattctaggaaaatgtgtggtcatgtttgtcaaggaatactttaaatta
tgcccagaaaattttcgagatgaggatgtttttgtctgtgaatcacgatattctgccaaa
accaaatcttttaagaaaattaaactgtggaccatgcccgtcagctcggttaggtttgtc
cctcgagatgtgcccttgcctgtggtccgagtggcctctgtatttgcaaacgcagataaa
gcggatgatgagaagaatacagacaactcagaggacagtcgaactgaagacagttgtaac
ttggaaaaggagaaagaagatgtccctgtggaaatgtcgaatggtgaaccaggttgccac
tactttgagcagctccggtataatgacatgtggctgaaggttggcgactgtgtcttcatc
aagtcccatgggctagtgcgtcctcgtgttggcagaattgaaaaggtatgggtccgagat
ggagctgcgtatttttatggccccatcttcattcacccagaagagacggaacatgagccg
acaaaaatgttctacaagaaggaagtgtttttgagtaatctggaagaaacctgtcccatg
acatgtattctaggaaaatgtgctgtgttgtcattcaaggacttcctctcctgcaggcca
actgaaattccagaaaatgacattctgctttgtgagagccgctacaacgagagtgacaag
cagatgaagaaatttaagggactgaagagattttcactgtctgctaaagtggtagatgat
gaaatttattacttcagaaaaccaattgttcctcagaaggagccctcacctttattggaa
aagaagatccagttgctagaagctaaatttgctgagttagaaggtggagatgatgatatt
gaagagatgggagaagaggatagtgaggtcattgagcctccctctctacctcaacttcag
actcccctggccagtgagctggatctcatgccctacacacccccacagtctacgcccaaa
tctgccaaaggcagtgcaaagaaggaaggctccaaacggaagatcaacatgagtggctac
atcctgttcagcagtgagatgagagctgtgattaaggcccagcacccagactattctttt
ggggagctcagccgactggtggggacagagtggagaaaccttgagacagccaagaaagca
gaatatgaagagcgggcagctaaagttgctgagcagcaggagagagagcgagcagcacag
caacagcagccgagtgcttctccccgagcaggcacccctgtgggggctctcatgggggtg
gtgccaccaccaacaccaatggggatgctcaatcagcagttgacacctgttgcaggcatg
atgggtggctatccgccaggccttccacctttgcagggcccagttgatggccttgttagc
atgggcagcatgcagccacttcaccctggggggcctccaccccaccatcttccgccaggt
gtgcccggcctcccgggcatcccaccaccgggtgtgatgaaccaaggagtggcccctatg
gtagggactccagcaccaggtggaagtccgtatggacagcaggtaggtgttctggggcct
ccagggcagcaggcaccacctccatatcctggcccacatcctgctggcccccctgtcata
cagcagccaacaacacccatgtttgtggctcccccaccgaagacccaacggcttctccac
tcagaggcctacctaaaatacattgaaggactcagtgctgagtccaacagcattagcaag
tgggaccagactctggcagctcgaagacgtgatgtccatctgtcgaaagaacaggagagc
cgccttccctctcactggctaaaaagtaaaggggcccacaccaccatggcagatgcccta
tggcgccttcgggatctgatgctccgagacaccctcaacattcgccaagcatacaatcta
gaaaacctttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (43)   
   UniProt (1)   
   RefSeq(pep) (42)   
DNA sequence (44)   
   RefSeq(nuc) (42)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (121)   

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