KEGG   Bos taurus (cow): 507340
Entry
507340            CDS       T01008                                 
Symbol
ATG13
Name
(RefSeq) autophagy-related protein 13
  KO
K08331  autophagy-related protein 13
Organism
bta  Bos taurus (cow)
Pathway
bta04136  Autophagy - other
bta04140  Autophagy - animal
bta04211  Longevity regulating pathway
bta05010  Alzheimer disease
bta05014  Amyotrophic lateral sclerosis
bta05016  Huntington disease
bta05017  Spinocerebellar ataxia
bta05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:bta00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    507340 (ATG13)
   04136 Autophagy - other
    507340 (ATG13)
 09150 Organismal Systems
  09149 Aging
   04211 Longevity regulating pathway
    507340 (ATG13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    507340 (ATG13)
   05014 Amyotrophic lateral sclerosis
    507340 (ATG13)
   05016 Huntington disease
    507340 (ATG13)
   05017 Spinocerebellar ataxia
    507340 (ATG13)
   05022 Pathways of neurodegeneration - multiple diseases
    507340 (ATG13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:bta04131]
    507340 (ATG13)
   03029 Mitochondrial biogenesis [BR:bta03029]
    507340 (ATG13)
Membrane trafficking [BR:bta04131]
 Autophagy
  Autophagosome formation proteins
   ULK complex
    507340 (ATG13)
   Atg1 complex
    507340 (ATG13)
Mitochondrial biogenesis [BR:bta03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-independent mechanism factors
    507340 (ATG13)
SSDB
Motif
Pfam: ATG13
Other DBs
NCBI-GeneID: 507340
NCBI-ProteinID: NP_001070280
BGD-bta: BT20475
Ensembl: ENSBTAG00000017325
VGNC: 26251
UniProt: Q08DY8
Position
15:76577970..76620037
AA seq 480 aa
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYAVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGDVQLNGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRHFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDTGV
ACPSVEDSQEVCATSFSTSPPSQLMVPGKEGGVPLGPSQPAHAAQADQERLATYTPSDGA
HCAATPSSSEDAETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMF
APKNLELEDADPMVNPPDSPETTSPLQGSLHSDGSSGGSSGHTQDDFVMIDFKPAFSKDD
ILPMDLGTFYREFQNPPQLSSLSLDIGAQSMAEDLDSLPEKLAAHEKNVREFDAFVETLQ
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggaaactgatcttaattcccaggacagaaaggacctggacaagttcattaagtttttt
gccctcaagactgtccaagtgattgtccaggctcgactgggagagaagatttgtactcgt
tcgtcttcttccccaacgggttcagactggttcaatttagcaatcaaagacatcccagag
gttacacatgaagcaaagaaggccctggcagggcagctgcctgctgttgggaggtctatg
tgtgtggagatctcactcaagacttctgagggagattccatggagctagaaatctggtgt
ctggaaatgaatgaaaagtgtgataaagaaatcaaagtttcctatgctgtgtacaacaga
ttgtcgttgctgctgaagtctctgcttgctataactagggtgacaccagcttacagactc
tccagaaagcaggggcatgaatatgtcatcttatacagaatatattttggggacgttcag
ctgaatggcttaggggaaggtttccagacagttcgtgttgggacagtgggtacccctgtg
ggcaccatcactctttcctgtgcttacaggattaacttggcattcatgtccaccaggcac
tttgagaggaccccacctatcatgggcattattattgatcactttgtggaccgtccctat
cccagctcctcgcccatgcacccctgcaattacagaaccgccggcgaggacactggagta
gcgtgtccttctgtggaagactctcaggaagtgtgcgccacctccttttccacctcgcct
ccctcccagctaatggtccctgggaaggaaggtggggtaccccttggtcccagccagcct
gcccatgctgcccaggctgaccaggagagactggcaacctacaccccttctgatggggcc
cactgcgccgccacgccgtccagcagtgaggatgctgaaactgtatcaaacagcagcgag
ggacgggcctccccccacgatgtcttggagaccatctttgtccggaaagtgggggctttt
gtcaacaagcccatcaaccaggtgaccctgaccagtttggacataccctttgccatgttt
gctcccaagaacctggagctggaggatgcagatcccatggtgaatcccccagattcccca
gagactacatctcctctccagggcagcctgcactctgatggctccagcgggggcagcagc
ggccatacccaggacgacttcgtcatgatcgactttaaaccagctttttctaaagacgac
atccttccgatggacttggggaccttctatcgtgaatttcagaacccgcctcagctgagc
agcctctccctcgacatcggggcccagtccatggccgaggacttggactcactcccagag
aagctggctgcgcacgagaagaatgtccgagaatttgatgcctttgtagaaaccctgcag
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (8)   
   KEGG PATHWAY (8)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   BGD-BTA (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (15)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (13)   
DNA sequence (15)   
   RefSeq(nuc) (13)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (57)   

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