KEGG   Bos taurus (cow): 522040
Entry
522040            CDS       T01008                                 
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
  KO
K18734  protein SMG8
Organism
bta  Bos taurus (cow)
Brite
KEGG Orthology (KO) [BR:bta00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bta03019]
    522040 (SMG8)
Messenger RNA biogenesis [BR:bta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     522040 (SMG8)
SSDB
Motif
Pfam: Smg8_Smg9
Other DBs
NCBI-GeneID: 522040
NCBI-ProteinID: NP_001073755
Ensembl: ENSBTAG00000003365
VGNC: 55871
UniProt: A1A4J7
Position
19:10161464..10166586
AA seq 954 aa
MAGPVSLRELLMGASAWTSSESPEGSPTEGGGSAAGGPEPPWREDEICVVGIFGKTALRL
NSEKFSLVNTVCDRQVFPLFRHQDPGDSGAGIRTEAGAVGEAGGAGDPGAGAGAGAGAGA
GDPVRGGVTAAEGNRTEPGSQDYSLLQAYYNQESKVLYLLLTSICDNSQLLRACRALQSG
EAGGGLSLPHAEAHEFWKHQEKVQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDG
LRQKVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRNQDPAHPDKPK
KHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLL
DQLKSHCTVKDPESLLVPAPLSGSRRYQVMRQHSRQQLSFHTDTSSSSSSGQLVDFTLRE
FLWQHVELVLSKKGFDDSVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDPASPTG
ELTSKILSSIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQAL
RVYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEA
DRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPV
FEPSTPDPAPAKNESSPAPPDADADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPAD
PQAGGDNPEVHGQGEVKTEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLG
PAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAVPGKRSAVV
MGRGRRRDDIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYIL
SSSQGRGLKPHYAQLMRLFVVVPDAPLQIILTPQVRNITFCVVRQSCLLFVSIV
NT seq 2865 nt   +upstreamnt  +downstreamnt
atggcgggtcccgtcagcttaagagagcttctaatgggcgcttcagcctggacaagctct
gagagtcccgagggatcccctacagagggtggtgggagcgcggctggcggaccggagcct
ccttggcgggaggatgagatctgcgtggtgggaatcttcggcaaaacggctctgcgcctg
aattccgagaagttttcacttgtgaacacggtgtgcgaccgacaggtctttcccctcttt
cgccaccaagatcctggagattcgggggctggaatcaggaccgaggctggggccgtcggg
gaggctggcggagccggggaccctggggctggggccggggccggggccggggccggggcc
ggggatccagttcggggaggtgtaactgccgcggaaggcaaccgaactgagccaggttcc
caggattacagccttctgcaagcctattacaaccaggaaagcaaagttctataccttctt
cttacttccatctgtgacaattcccagcttctgcgggcttgtcgggcccttcagagcggg
gaagctggaggtggcctctctttacctcatgcagaagcgcacgagttctggaagcatcaa
gagaaggtgcagtgcctcagtctcctttaccttttctccgtctgtcacatcctgcttctg
gtccatcccacttgttcctttgacatcacttatgatcgagtattcagagccctggatgga
ctgagacagaaagtactgccccttctcaaaacagctattaaggattgtccagttggtaaa
gactggaaactaaactgccgaccttgcccacctagactccttttcctttttcaactcaat
ggagcactcaaggtagaaccccctcggaaccaagacccagctcatccagataagcccaag
aagcattctcccaaaaggagactgcagcatgccctggaggaccagatctatagaatcttc
cggaagagtcgtgtcttgactaatcagagtatcaactgcctctttactgtacctgccaat
caagcttttgtgtacatagttcccggaagccaggaggaggatccagtaggcatgttgctg
gaccaacttaagagtcactgtactgtgaaagaccctgaatctttgttggtccctgcacca
ctttctgggtccaggcgataccaggtgatgaggcagcacagcagacaacagctttctttc
cacactgacaccagcagttccagttcttcggggcagctagtggatttcacgctgcgagag
ttcctatggcagcatgtagagctagtactaagcaagaaaggttttgatgacagtgtgggc
aggaacccacagccttcccattttgaacttcctacttatcagaagtggatctcagcagct
tcaaaactgtatgaagtagctattgatgggaaagaggaggacccagcatctcccactggg
gagttaacatctaagattttaagcagtattaaagtcttggaaggatttttggatattgac
acaaaattctcagagaaccgttgccaaaaagctttaccgatggcccatagtgcctaccag
tcaaatttgcctcataattacacaatgactgtccacaagaatcagcttgcccaggctctt
cgagtgtacagccaacatgctaggggtccagcctttcacaagtatgccatgcagttacac
gaagactgctacaagttttggagcaacggccatcaactctgtgaggagaggagtttaact
gatcaacactgtgtacacaaatttcactccttacctaaatcaggagaaaaaccagaggct
gatagaaatcctcctgtgctgtatcacaatagccgagctcgatccactggcgcctgtaac
tgtggaaggaaacaggcaccccgagacgatccctttgatatcaaggcagctaactatgac
ttttatcagcttctggaagaaaaatgttgtggaaaattggatcacatcaatttcccagta
tttgaaccaagtactccagatcctgctcctgccaaaaatgaatcatctcctgctccccca
gatgcagatgctgataaacttaaagagaaagaacctcaaacccaaggagagagcacaagc
ctgagtttagctttgagtttaggccagtctactgatagtttaggtacctatccagccgat
ccacaagcaggaggagataatccagaagttcatggccaaggtgaagtaaaaactgagaag
agaccaaacttggttgatcggcaggcatccacagttgaatatctcccaggcatgcttcat
tcaaattgccccaaaggtctcctacccaaattctccagctggtctttggttaaactaggc
cctgctaagtcttacaactttcatactggtttggaccaacagggcttcattccaggaaca
aactatcttatgccctgggacattgtcatcaggactagagctgaagatgaaggagactta
gacacgaattcttggcctgctccaaataaggctgttcctggtaagagaagtgcagttgtc
atgggcagaggaagacggcgagatgacatagcgcgagcatttgtgggctttgaatacgaa
gactctcgaggtcgaagatttatgtgctcaggacctgacaaagtaatgaaagtaatggga
agtggccccaaggaatcagctttaaaagccctgaatagtgacatgcccttgtatattctg
tcatcctctcagggtagagggctgaaaccacattatgctcaacttatgaggctttttgtt
gtggttcctgatgctcctttgcagataatcttaacgcctcaggtaagaaatataactttt
tgtgttgttagacaatcatgtttgttgtttgtttcgattgtttga

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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