KEGG   Burkholderia territorii: WS51_27065
Entry
WS51_27065        CDS       T04843                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
btei  Burkholderia territorii
Pathway
btei03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:btei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WS51_27065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:btei03400]
    WS51_27065
Enzymes [BR:btei01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WS51_27065
DNA repair and recombination proteins [BR:btei03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WS51_27065
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AOI67370
Position
3:196238..199054
AA seq 938 aa
MPGKLDPYRRKRHFGETPEPEGAHGRRRAKAKADAQPAARARARAGHPLRFVIQEHHARR
LHYDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVV
VWDEGTWTPDGGLAQARDGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERD
DDARGADEFDVVGERPGSVHDGAGRAARADSNGGSKRTRAAPRGRGDEAGKHDARGARHD
GRDRARDDRDRAPADPSAIEGAVRAPLPERVAPQLATLVDGPPHQGDWRYELKFDGYRIL
ARISGKGTRRHVKLMTREGRDWTAKLRAQREALGALAVDDAWLDGEAVVLGANGLPDFQA
LQNALGAGRSDAVTLFVFDLPYLDGHDLRDAPLTARRALLEPLLADSDPARVRFSPDLGD
DVASLIASACDTGLEGLIGKRADSRYRAGRSPAWIKLKCRRRQEFVIGGYTEPSGSRHGF
GALLLGVHEPAPGGKRTRGPAPLRYVGRVGTGFDARMLDRLASILRKHERDTAPFDPPPR
ERSRTRVHWIEPTLVAECEFAEWTGDGIVRQAAFVALREDKPATQIVREVPKHANTEVAM
DQRQTTHDDKHRAKHASHDANGREHSARSRASARTTGSDDTGPDRLGRVRITHPDRVLDP
ASGTRKIDLARYWQWVAPWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHA
GLDPGHGPLLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSTM
IEAAQLVRGLLDELGLASFCKTSGGKGLHVVVPITRHLGWDDVKDFSRAVAQHVAAALPD
RFTATMGPRHRRGKIFIDYLRNGRGASTIAAYSTRARPGMGVSVPLRWDEVPGTTGGAQW
TIDTLHERLDRLERDPWEGYDDTRQRITAQMRARLDAS
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgcccggcaagctcgatccatatcgccgcaaacgccacttcggcgagacgccggaaccc
gaaggcgcgcacgggcgtcggcgggcgaaggcgaaggccgatgcgcagccggccgctcgc
gcgcgcgcgcgtgccggccatccgctgcgcttcgtgatccaggaacatcatgcaaggcga
ttgcactatgacttccggctggaactcgacggcacgctgaagtcgtgggccgtgccgaag
gggccgagcctcgatccgtcggtgaagcgtcttgccgtgcatgtcgaggaccatccgctc
gaatatgcgtcgttcgaaggcgagattccggccgggcattacggcgcggggtcggtcgtc
gtctgggacgaaggcacgtggacgcccgacggcggactcgcgcaggcacgcgacggctat
cgcgcgggcaagctgacgttccggctcgacggcgaaaagctgcacggcggctgggcgctc
gtgcgcagcgggcgccaggaggggcggcaggagcagtggctgctgatcaaggagcgcgac
gacgatgcgcgcggcgcggatgaattcgacgtcgtcggcgagcggccggggagtgtgcat
gacggggccgggcgggcggcgcgggcggattcgaacggcggctcgaagcgcacgcgtgcg
gcgccgcgcggccgcggcgacgaggccggaaagcacgacgcgcgcggcgcgcggcatgac
ggccgcgaccgcgctcgagacgaccgcgatcgcgcgcctgcggatccgtccgcgatcgaa
ggcgcggtgcgcgcgccgttgcccgagcgcgtcgcgccgcagctcgcgacgctggtcgac
ggtccgccgcaccagggcgactggcgctacgaactgaaattcgacggctaccggatcctc
gcgcgcatttccggcaagggcacgcgccggcacgtgaagctgatgacgcgcgaaggtcgc
gactggaccgcgaagctgcgcgcgcaacgcgaggcgctcggggcgctcgccgtcgacgac
gcatggctcgacggcgaggccgtcgtgctcggcgcgaacggtcttcccgatttccaggcg
cttcagaacgccctcggtgcgggacgctcggatgcggtcacgctgttcgtattcgatctg
ccctatctcgacggacacgacttgcgcgacgcaccgctcaccgcacgccgcgcgctgctc
gaaccgctgctggccgacagcgaccccgcacgagtgcgcttttcgcccgatctcggcgac
gacgttgcgtcgctgatcgcgagcgcatgcgataccggtctcgaagggctgatcggcaag
cgcgcggactcgcgctatcgggcgggacgttcgcccgcatggatcaagctcaaatgcagg
cgccggcaggagttcgtgatcggcggctataccgagccatcgggcagccgtcacggcttc
ggtgcgctgctgctcggcgtgcacgaaccggcgccgggcggcaagcgcacgcgcgggccg
gcaccgctgcgctatgtcgggcgggtcggcacgggcttcgacgcgcgcatgctcgaccgg
cttgcgtcgatcctgcgcaagcatgagcgcgatacggcgccgttcgatccgccgccgcgc
gagcgctcgcgcacacgtgtgcactggatcgagccgacgctcgtcgccgaatgcgaattc
gcggagtggaccggcgacggcatcgtgcggcaggccgcgttcgtcgcgctgcgcgaggac
aagccggccacgcagatcgtccgcgaagtgccgaaacatgcgaatacggaggtggcgatg
gatcaacgtcagaccacgcacgacgacaaacaccgcgcgaagcacgcgtcgcacgacgcg
aatggccgcgagcactccgcgcgctcgcgcgcatccgcccgcacgacgggcagcgacgat
accggcccggaccgcctcggccgcgtgcgtatcacccatcccgaccgcgtgctcgatccg
gccagcggcacgcgcaagatcgatctcgcgcgttactggcaatgggtcgcgccatggctg
ctgccggacctgaaggggcggcccgtgtcgctggtgcgcgcgcctggcgacatcgcgggc
gagctgttcttccagaagcatgccgagcggcgcgagattccgttcgtcacgcagcacgcc
gggctcgatccggggcacggtccgctgctgtcgctcgacagtgtcgacgcgctgctcggc
gcggcgcagatgggcacgatcgagttgcatacgtggaatgcgcatgcgtcgaacatcgag
cggccggaccggatcgtgttcgacctcgaccccgatccggcgctgccgtggagcacgatg
atcgaggccgcgcaactcgtgcgcgggctgctcgacgagctggggctcgcgtcgttctgc
aagacgagcggcggcaagggcctgcatgtggtcgtgccgatcacgcggcacctcggctgg
gacgacgtgaaggacttctcgcgcgccgtcgcgcagcacgtcgcggccgcgttgcccgac
cgtttcaccgcgacgatgggcccgcgtcatcgtcgcggcaagatcttcattgactacctg
cgcaacggtcgcggcgcgagcacgatcgccgcgtattcgacgcgtgcgcggcccgggatg
ggcgtgtccgtgccgctgcgctgggacgaagtgcccggcacgaccggcggcgcgcaatgg
acgatcgacacgctgcatgaacggctcgaccggctcgagcgcgatccgtgggaaggctac
gacgacacgcggcagcgcatcaccgcgcagatgcgcgcgcggctcgatgcatcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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