KEGG   Bacillus thuringiensis serovar finitimus YBT-020: YBT020_14060
Entry
YBT020_14060      CDS       T01839                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
btf  Bacillus thuringiensis serovar finitimus YBT-020
Pathway
btf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:btf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YBT020_14060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:btf03019]
    YBT020_14060
   03400 DNA repair and recombination proteins [BR:btf03400]
    YBT020_14060
Enzymes [BR:btf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     YBT020_14060
Messenger RNA biogenesis [BR:btf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     YBT020_14060
DNA repair and recombination proteins [BR:btf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      YBT020_14060
SSDB
Motif
Pfam: RQC DEAD HTH_40 Helicase_C HRDC RecQ_Zn_bind ResIII HTH_7 HTH_38 HTH_10 HTH_29 HTH_28 HEM4 HTH_45 HTH_23 Sigma70_r4 A-ATP_synth_H_N HTH_35 GerE
Other DBs
NCBI-ProteinID: ADY22044
Position
complement(2741612..2743729)
AA seq 705 aa
MFTKAQELLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTT
LVISPLISLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDS
MEFVDQLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQ
VRDDICNTLGINQENTIMTTFERENLSFSVIKGQDRNAYLADYIRQNQKESGIIYAATRK
VVDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRY
VIHYQLPKNMESYYQEAGRAGRDGLDSACILLYSSQDVQVQRFLIDQSTGESRFSNELEK
LQNMTDYCHTEQCLQSFILQYFGEETKEDCGRCGNCTDDRESIDVTREAQMVLSCMIRTN
QRFGKQMIAQVLTGSKNKKVIEFNFHTLPTYGLLSNRSVKEVSEFIEFLISDELIAVEHG
TYPTLKVTEKGKEVLLGKENVLRKERVETRQIVQDHPLFEVLREVRKEIAQGEGVPPFVI
FSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKYGSHFLQAVQHFIDENPNYAETIKTEV
VTERKKSGKASANSHLETYEMYKQGINLAEIAKERGLSRQTIENHLIRCFEDGMEVDWNS
FVPAEYEQLIETAVQNADGGLKSIKEQLPNEVSYFMIRAYLQIRK
NT seq 2118 nt   +upstreamnt  +downstreamnt
ttgtttacaaaagcacaagaacttttagcgtcttatttcggttattcgtcattccgaaga
ggacaagatgaaacaattaaaaatgtattagatgggaaagatacagtttgtattatgcct
acaggtggtggtaagtcaatttgttatcaaattcccgcattagtatttgaaggaacaacg
ttagttatatcgcctttaatatcacttatgaaagaccaagtagatacattagtacaaaat
ggtatttcagctacatatattaatagttctatttcgattacagaagcgaatcaacgaatt
caattagcgaaacagggccattataagttactttatgtagcgccagagcgacttgattca
atggaatttgttgaccaactgatcgatatgaaaatcccgatgattgccattgatgaggcg
cactgtatttcgcagtggggacatgatttccgtccgagctatttacatatacaccgtata
ttagattatcttccagaaaaaccgctcgtattagcattaactgctacggcaacaccacaa
gttcgtgatgatatttgcaacacgcttggaattaatcaagaaaacacgattatgacaacg
tttgagcgcgagaacttatcattttctgttattaaaggacaagatcgtaatgcatattta
gcggattatattcgtcaaaatcaaaaggaatctgggattatatatgcagctactagaaaa
gtagttgatcagttgtatgaggatttaatgaaagcgggagtttctgtatcaaaatatcat
gccggtatgagtgataacgatcgaaatgagcaacaagaactctttttacgtgatgaagtg
agtgtaatggtagccacatctgcgtttgggatgggtattgataaatcgaatattcgttac
gttatccattatcaacttccaaaaaatatggaaagttattaccaagaagcaggacgtgct
ggccgtgacggattagatagtgcatgtatattgctttattcttctcaagatgtacaagta
caacgctttttaattgatcaatcgacaggagagtctcgtttttcaaatgaacttgaaaaa
ctgcaaaatatgactgactactgtcatacagaacaatgtttacaatcatttattttgcaa
tactttggagaagaaacaaaagaagattgtggccgctgcggtaattgtacagacgaccga
gaaagtatcgatgtgacgagagaagcgcaaatggttttatcttgtatgattaggacgaac
caacgatttggtaaacaaatgattgcacaagtactaactggatctaaaaataagaaagtc
attgaatttaattttcatactttgccaacttacggacttttatcaaatcgtagtgtaaaa
gaagtgagtgaatttattgagtttttaatttcagacgaattaattgcagttgaacatggt
acttacccgacactaaaagtgacggaaaaagggaaagaagtgttactaggtaaagagaat
gtattacgtaaagaacgagtagagacaagacaaatcgttcaagatcatcctttatttgaa
gtacttcgtgaagtacgtaaagaaattgcacaaggagaaggtgtacctccattcgttatt
ttctctgaccaaacgttgaaagatatgtgcgcaaaaatgccgcaaagcgattctgaactt
ttaactgtaaaagggattggtgaacacaaacttgtgaagtatggttcgcacttcttacaa
gcagttcagcactttattgatgaaaacccaaactatgctgaaactattaaaacagaagtg
gtgacagagcggaagaaatcagggaaagcttcagcaaattctcatttggaaacgtatgaa
atgtataaacaaggtattaatctagctgaaattgcgaaagaacgtggattatcaagacaa
acgattgaaaatcatttaattcgttgttttgaagatggaatggaagtagactggaacagt
tttgttcctgcagaatacgaacaactgattgaaactgctgtgcaaaatgctgatggtggt
ctgaaatcgattaaagaacaacttccgaatgaagtgagttactttatgattcgtgcttat
ttacaaattagaaagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (29)   

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