KEGG   Bacillus thuringiensis Bt407: BTB_c03560
Entry
BTB_c03560        CDS       T02277                                 
Symbol
ligA
Name
(GenBank) DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
btg  Bacillus thuringiensis Bt407
Pathway
btg03030  DNA replication
btg03410  Base excision repair
btg03420  Nucleotide excision repair
btg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:btg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BTB_c03560 (ligA)
   03410 Base excision repair
    BTB_c03560 (ligA)
   03420 Nucleotide excision repair
    BTB_c03560 (ligA)
   03430 Mismatch repair
    BTB_c03560 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:btg03032]
    BTB_c03560 (ligA)
   03400 DNA repair and recombination proteins [BR:btg03400]
    BTB_c03560 (ligA)
Enzymes [BR:btg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BTB_c03560 (ligA)
DNA replication proteins [BR:btg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BTB_c03560 (ligA)
DNA repair and recombination proteins [BR:btg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BTB_c03560 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BTB_c03560 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BTB_c03560 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BTB_c03560 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD RNA_pol_A_CTD HHH PTCB-BRCT BRCT_2 5_3_exonuc HHH_3 RNA_ligase DUF5395
Other DBs
NCBI-ProteinID: AFV16093
Position
331347..333356
AA seq 669 aa
MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP
SVRVGGTILDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGIDGANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTIPSHSESL
DFLGELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYRMPTHCPACESELVRLEEEVA
LRCINPTCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYALTKEQLLQ
LERFGEKSATNLIQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDELVKATEE
ELKAINEIGEKMAQSVVTYFDNEDVLELLQQFKEYGVNMTYKGIKIADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgtcaaaagagatagcaaaaaaacgtatagaagaactgcgtgatttgttaaatacattt
aattatcaatatcacgtattagacaatccttctgtttctgatgcggaatatgaccgtgat
atgcaggagcttataaaattagaagcagagaacccagagtttatgagtgaagattctccc
tccgttcgcgttgggggaactattcttgatatatttgaaaaagtaacacataagtcacca
atgttaagtttagggaatgcatttaacgaaggggatttgcgtgatttcgacagaagagta
cgtcaaggaattgatggtgcgaatgtaagatatatatgtgaattaaaaattgacgggctt
gccgtttcgcttcattatgaaaaaggacgcttcattcaaggggcgacacgtggtgatggt
gtaacgggtgaagatattactcaaaatttaaaaacgattaaagctatcccacttcgttta
aatgaagaagtaacgttagaagcacgaggcgaagcttatatgccgaagcgttcattcgtt
aaactaaatgaagaaaaagagcaaaatggagaagatgtatttgcgaatccgcgtaatgca
gcagcaggttcaatacgtcaacttgatccgaaaattgcagcgaagcgtaacttatctatg
tttgtgtacggtcttgcgaatgtagaagaaaaaacaattccatcgcacagtgaatcgctt
gatttcttaggtgaactcggatttaagacaaatccaaatcgccgtacatgtgaaacaatc
gaagaggttatagcttatgtagaagaatggcaagaaaaacgtccgcatcttgattatgag
attgatggaatcgttataaaagtagatgatgttgctcttcaagaaagtctaggaactaca
gcgaagagtccacgatgggcgattgcttataaattcccagctgaagaagttgtaacgaga
ctaacaggcattgaattaagtgttggccgaacaggggttgtaacgccgactgcagagcta
gagccagtgagagttgctggtacgattgttcgccgtgcttctttacataacgaagatttg
attcgtgaaaaagacattcgaattggtgactacgttgttgtgaagaaggctggagatatt
attcctgaagttgtgaacgttatttttgataagcgtactggtgaagaagaagaataccgt
atgccaacgcattgtccagcatgtgagagtgaacttgttcgtttagaagaagaagtagca
cttcgatgtataaatccgacttgtccggctcaaattcgagagggattaatccatttcgtt
tcaagaaatgcgatgaatattgatggacttggagaacgtgtcattacacaactctttgat
gcagattatattcgtacatttgctgatttatatgcattgacgaaagagcaattattacag
ttagaacgttttggtgaaaaatcagcaacaaacttaatacaagcaattgaaaattctaaa
gaaaactcgttagagcgattattatttggtcttggaattcgccacgttggagcgaaagca
gcacgtacatttgcagagcactttgaaacgatggatgagcttgtaaaagcaacagaagaa
gaactaaaagcaattaatgaaattggcgaaaaaatggctcaatctgttgtgacatatttt
gataatgaagatgtattagaattattacagcagtttaaagagtatggcgtgaatatgaca
tacaaaggtataaaaattgcagatttacaaaatgttgaatcttacttcgcaggaaaaacg
gttgttttaacaggtaagctagaagttatgggacgaagtgaagcgaagaagaagattgag
gcattaggtggaaaagtaacaggaagtgttagtaagagtacggatttggttgttgcaggt
gaagcagctggttcgaaattagcacaagcggagaaacataatgttgaggtttggaatgaa
gagaggttcttacaagagctaaataagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (14)   
   Pfam (14)   
All databases (33)   

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