KEGG   Bacillus thuringiensis serovar konkukian 97-27: BT9727_0048
Entry
BT9727_0048       CDS       T00179                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
btk  Bacillus thuringiensis serovar konkukian 97-27
Pathway
btk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:btk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BT9727_0048 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:btk03400]
    BT9727_0048 (mfd)
Enzymes [BR:btk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BT9727_0048 (mfd)
DNA repair and recombination proteins [BR:btk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BT9727_0048 (mfd)
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H RecG_dom3_C TniB AAA_16
Other DBs
NCBI-ProteinID: AAT62190
UniProt: Q6HPW4
Position
54532..58068
AA seq 1178 aa
MKMIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTH
NLYQAQKVHEDLVALLGEKDVWLYPVNELIASELGVASPELKAQRIEVLNRLAAGEHGII
VAPVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRG
GILDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKS
GIKHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYNEPASLI
DYLPEDGVVILDEISRIQETASHLESEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKR
SFVYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDE
RVKKLQHILSDYDIDADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKK
VKKSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQG
NDKLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAER
EASKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKT
EVAIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNET
IKGLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFL
YNRVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGV
DIPNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENT
VNVEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGY
LLQIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEG
SQLKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq 3537 nt   +upstreamnt  +downstreamnt
ttgaaaatgataggtttattagagcaattttataaaaatgaagagatccaatcggtcatt
aatggactagaagatggtttaaaagagcaacttgtatcaggtatggcaacatcttctcgt
tcgttattaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcat
aatttatatcaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaggat
gtatggctatatccagtaaatgaattgatagcatcagaacttggtgttgcaagcccagaa
ttgaaggcgcaacgtattgaagtgttaaatcgcttagctgcaggagaacatgggattatt
gtagcaccagttgcaggactacgcagatttttaccaatgaaagagttgtggaagcaaagg
caaatcgaaatcaatctagggcaagagattgatttagatacattcttgcatactttacat
catatcggctatgagcgtaagtctatggtagaagctcctggagaatttagtttacgcggg
ggaatattagatatttatccactaactgaagagctaccatttcgtattgaatttttcgat
acagaagttgattctattcgattatttgatgtggatgaacagcgctctcaagataaaaaa
gaaagtgttagatttggtccagcaacagagtttttattttcgcaggaagaattgaaatcg
ggaattaagcatcttgaagaaggtctgactaagacgatgcaaaaactttccgatgataag
ttgaagactacagtgcttgagacggtaagtcatgaaattgagatgttaaaaaacgggcaa
agtatagaacagatgtttaaatatttatctattttctataacgaacctgctagtctgata
gattatttaccagaagatggtgttgtgattttagatgaaatttcacgtattcaagaaaca
gcatctcatcttgaatcagaagaggcggaatggtatatatcccttcttggtgagggaaca
attattcaagatttatctttctctcattcgtttgaagaatttcttcatcataaaaaaaga
agttttgtatatttaacgttattcttacgtcatatagcgcatacacatccccaaaacatt
gtgaatgtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaact
gaaattgatagatggaacgaagggcattttacgaccgttgtgctaggtacagatgatgag
cgtgtgaaaaaactacaacatattttaagtgattatgatattgatgcagatattgtagag
ggcacagatatattattgcctggaaggttacaaattgctgtaggtgatttacatgcaggg
tttgaaatgccgatgcaaaagcttgttgtcattactgaaaaagagctttttcataagaaa
gttaaaaaatcacaacgtaagcaaaagttatcgaatgctgaacgcattaaaagttattcg
gaattaaaagttggggattatgtagttcatgtaaatcatggtataggtaaatttttaggt
attgagacattagagattaacggtgttcataaagattatttgaatattaaatatcaaggt
aatgataagttatacgttccaattgaacaaattgaccaagtgcaaaaatatgtaggatct
gaaggcaaggatccgaaagtttataaattgggcggaaacgattggaaaaaggtcaaaaca
aaagttgaaaaatctgtacaagacattgcggatgacctcattaaactctatgctgagcgc
gaagcttcaaagggttatgcatatacaccagatacggcagaacaacaagaatttgagtct
tctttcccgtatcaagagacagaggatcaattacgttctattgaagagattaaaaaggat
atggaacgcggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacg
gaagtagctattcgtgcggcgtttaaagcaattatggatgaaaaacaagttgcaatttta
gtgccgacaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagat
tatccaatcaatataggattattaagtagattccgtacgagaaagcagcaaaatgaaaca
attaaaggtttaaaagatggcacggtagatattgtaatcggaacgcatcgtattttatct
aaagatgttacttataaagatttaggtcttcttattattgatgaagaacaaagatttggc
gtaacacataaagaaaaaattaaacaattaaaagcaaatgttgacgtattaacattaacg
gcaaccccgatcccgcgtacgcttcatatgtctatgcttggtgtacgtgatttatctgtt
attgagacgccgccggaaaatcgtttcccagttcaaacatatgtagttgagtataatcca
gcgttaatgcgagaggcgatagaacgcgagcttgcaagaggtgggcaagtttacttccta
tataatcgtgtggaggatatcgaacgaaaagcagatgaaatttcgatgttagttccagat
gcacgtgtcacttatgcacatgggaaaatgaacgaaagtgaattagagtctgttatgcta
tcgtttttagaagggcagcatgatgttcttgtaagtacaacgattattgagacaggtgta
gatattccgaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcgcag
ttgtatcagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcttactttgca
tacaaacgagataaagtgttatcagaagttgcggagaagcgtctgcaagccattaaggag
ttcacagagcttgggtctggtttcaaaattgcgatgcgagatttatcaattcgtggtgca
ggtaacttgttaggagctgaacaacatggatttattgattctgtcggatttgatttatat
tctcaaatgttaaaagacgcaattgaacagcgtagaggaacagacggagttgaaaataca
gttaatgttgaaattgatttagaagtagatgcatatttaccagatgcttatatttcggat
agtaaacaaaaaattatgatgtataaacaatttagaggtgtttctgcgattgaagatatt
gaagagttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttac
ttattacaaattgcaaatattaaagtattggcaatgaaagaacaaattgaattaattaag
caaaataaatttgaagtaacaattctgttctcagaacaagcgagtcaaaatattgatggt
ggaaaattattcatgctcggaaatagttttggacgtatgatcggtttaggaatggaagga
tcacaattgaaaatcgtcatgaaaacaaatggcttagagacatcgaagtggttaacaatt
gctgaaaatttattaaaaggcttgccagatgtaaaaaaagaagtcataaatgcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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