KEGG   Bibersteinia trehalosi USDA-ARS-USMARC-189: F543_21690
Entry
F543_21690        CDS       T03018                                 
Name
(GenBank) Protein hfq
  KO
K03666  host factor-I protein
Organism
btrh  Bibersteinia trehalosi USDA-ARS-USMARC-189
Pathway
btrh02024  Quorum sensing
btrh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:btrh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F543_21690
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    F543_21690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:btrh03019]
    F543_21690
   03036 Chromosome and associated proteins [BR:btrh03036]
    F543_21690
Messenger RNA biogenesis [BR:btrh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     F543_21690
Chromosome and associated proteins [BR:btrh03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    F543_21690
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AHG85024
Position
complement(2262034..2262321)
AA seq 95 aa
MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPARSISHNNSGHNHHSAPAQAAVQPAVTESAE
NT seq 288 nt   +upstreamnt  +downstreamnt
atggcaaaaggtcaatctttacaagatccatatttaaacgcactacgccgtgagcgtatc
cctgtgtctatttaccttgtaaacgggatcaaattacaaggtcaaatcgaatctttcgac
caatttgtaattttactgaaaaatacagtaagccagatggtgtataagcatgctatttcg
accgtggtgccagcacgttctatttctcataataatagtgggcataatcatcattcagca
ccagcacaagctgcggtacagcctgcagtaacagaaagtgcggaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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