KEGG   Burkholderia ubonensis: BW23_1409
Entry
BW23_1409         CDS       T03794                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bub  Burkholderia ubonensis
Pathway
bub03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BW23_1409 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bub03021]
    BW23_1409 (rpoB)
   03400 DNA repair and recombination proteins [BR:bub03400]
    BW23_1409 (rpoB)
Enzymes [BR:bub01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BW23_1409 (rpoB)
Transcription machinery [BR:bub03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BW23_1409 (rpoB)
DNA repair and recombination proteins [BR:bub03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BW23_1409 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 UbiD
Other DBs
NCBI-ProteinID: AJX17362
Position
I:complement(1513536..1517642)
AA seq 1368 aa
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPATQRKPEGLQAAFTSV
FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDE
GAQLEFVPERLRGEVARFDITDRDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLG
RVLAKNVVDGDTGEVIANANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTLRVD
ETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEI
TGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDGKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLIDELVSSREAGETMMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR
LADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLQRQAKIEELRIFLTKIYNESGRAEDLESFTDDEILELAKNLREGVPFAT
PVFDGATEEEMGKMLDLAFPDDIAQQLDMNPSKNQVRLYDGRTGEPFERRVTLGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq 4107 nt   +upstreamnt  +downstreamnt
atgcaatattccttcaccgagaagaagcgcattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttcccttcttgctggccacccagcttgaatcattcagcacgtttctgcaa
gctgatgtgccggcgacgcaacgcaagcccgagggtttgcaggccgctttcacatccgtg
tttcccattgtttcgcacaatggcttcgcgcgtctcgaattcgtgagctacgcgctgtcc
tcgccggcgttcaacatcaaggaatgccaacagcggggcctgacgtactgttccgcgctg
cgcgcgaaggtgcgtctcgtcatcctcgacaaggaatcgccgaacaagccggtcgtcaag
gaagtgaaggagcaggaagtgtacatgggcgaaattccgctcatgacgccgacgggctcg
ttcgtcatcaacggcaccgagcgtgtgatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcacgg
atcattccgtaccgcggctcgtggctcgacttcgaattcgatccgaaggacatcctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctgaaggcgatcggcctc
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcacgctgatggacgaa
ggcgcgcaactcgagttcgtgccggagcgtctgcgcggtgaagtcgcgcgtttcgacatc
acggatcgcgacggcaaggtcatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgacctcgaggccgcgaagacgaagttcatctcggtgccggaagactacctgctcggc
cgcgtgctggcgaagaacgtcgtcgacggcgacaccggcgaagtgatcgcgaacgcgaac
gacgaagtcacggaaagcgtgctcgagaagctgcgcgaagcgggcatcaaggacatccag
acgctctacacgaacgacctggatcagggcccgtacatctcgtcgacgctgcgtgtcgac
gaaacgaccgacaagacggccgcgcgcattgcgatctatcgcatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggcgctgttcaaccgcctgttctacagcgaagaagcg
tacgacctgtcgaaggtcggccgcatgaagttcaatcgccgcgtcggccgtgacgagatc
accggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgatatcgaccacctcggcaaccgtcgcgtgcgt
tgcgtcggcgaactggcggagaaccagttccgcgccggtctcgtgcgtgtcgagcgcgcg
gtcaaggaacgcctcggccaggccgagagcgagaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgatccgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgcactgggc
ccgggcggtctgacgcgcgagcgcgcaggcttcgaagttcgtgacgtgcacccgacccac
tatggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctcgctctgtacgcgcacctgaacgagtacggtttcctcgagacgccgtaccgcaaggtc
gtggacggcaaggtgaccgaccagatcgactacctgtcggcgatcgaggaaggccgctac
atgatcgcgcaggcgaacgccgcgatcgacgagaacggccagctgatcgacgaactcgtg
tcgtcgcgtgaagccggcgaaacgatgatggtcacgccggaccgcatccagtacatggac
gtcgcgccgtcgcagatcgtgtcggttgcagcctcgctgattccgttcctcgagcacgat
gacgcgaaccgtgcactgatgggctcgaacatgcagcgtcaggccgtgccgtgtctgcgt
ccggagaagccggtcgtcggtacgggcatcgagcgcacctgtgcggtcgactcgggcacg
acggtccaggcgttccgcggcggcgtcgtcgactatgtcgacgcgggccgtatcgtgatt
cgcgtgaacgacgacgaagcagtcgcgggtgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgtgaagatgggc
gacaaggtctcgcgcggcgacgtgctggccgacggcgcctcgacggacctgggcgagctc
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagaaggtcgtggccgacgatcgctacacgtcgatccacatcgaa
gagctgaacgtcgttgcacgcgacacgaagctcgggccggaagaaatcacgcgcgacatc
tcgaacctggcggaagtccagctcggccgtctcgacgaatcgggcatcgtgtacatcggt
gcggaagtcgaagcgggcgacgtgctggtcggcaaggtcacgccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgattttcggcgagaaggcgtcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcaccgtgatcgacgtccaggtgttc
acgcgtgaaggcatccagcgcgacaagcgtgcgcaacagatcatcgacgacgaactgaag
cgctaccgtctcgacctgaacgaccagctgcgcatcgtggaaggcgacgcgttccagcgt
ctcgcgcgcatgctcgtgggcaaggtcgcgaacggcgggccgaagaagctcgcgaagggc
acgaagatcgaccaggcttacctggaagacctcgaccactaccactggttcgacatccgc
ctcgcggacgacgaggcagcggcgcagctcgaagcgatcaagaactcgatcgaagaaaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgcggtgaagcgccgcttgcag
cctggcgacaagatggcaggccgtcacggcaacaagggtgtcgtgtcgaagatcgttccg
atcgaagacatgccgtacatggccgacggccgtccggcagacgtcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcaggttctcgaagtgcacctcggctgggccgcg
aagggcctcggctggcgtatcggcgaaatgctgcagcgtcaggcgaagatcgaggagctg
cgcatcttcctgacgaagatctacaacgagtcgggtcgcgcggaagatctggaaagcttc
actgacgacgagatcctcgaactcgcgaagaacctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgacggtgcgaccgaggaagaaatgggcaagatgctcgacctcgcgttcccg
gacgacatcgcgcagcagctcgacatgaacccgtcgaagaaccaggtccgcctgtacgac
gggcgcacgggcgagccgttcgaacgccgcgtgacgctgggctacatgcactacctgaag
ctgcaccaccttgtcgacgacaagatgcacgcgcgttcgacgggcccgtactcgctcgtc
acgcagcagccgctgggcggcaaggcgcagttcggtggccagcgtttcggtgaaatggaa
gtgtgggcgctcgaagcgtacggcgcatcgtacgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgaccggccggacgaaggtttacgagaacctcgtcaagggcgatcacgtg
atcgatgcaggcatgccggaatccttcaacgtgctggtgaaggaaatccgctcgctcggt
atcgacatcgatctcgaccgcaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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