KEGG   Burkholderia humptydooensis MSMB43: AQ610_08500
Entry
AQ610_08500       CDS       T04266                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
bud  Burkholderia humptydooensis MSMB43
Pathway
bud02024  Quorum sensing
bud03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bud00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AQ610_08500
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AQ610_08500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bud03019]
    AQ610_08500
   03036 Chromosome and associated proteins [BR:bud03036]
    AQ610_08500
Messenger RNA biogenesis [BR:bud03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AQ610_08500
Chromosome and associated proteins [BR:bud03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AQ610_08500
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ALX44316
UniProt: A0A7U4ST38
Position
1:1850918..1851157
AA seq 79 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDAEAAS
NT seq 240 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgtaaagagcac
gtgccggtttcgatctatctcgtcaacggcatcaagctccaagggaacattgaatcgttc
gaccagtacgtcgtgttgctccggaacacagttacccagatggtttacaagcacgccatt
tcgacggtcgtgccggcgcgtccggtgaacttccacccggatgcggaagcagcgtcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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