KEGG   Burkholderia sp. CCGE1001: BC1001_1364
Entry
BC1001_1364       CDS       T01424                                 
Name
(GenBank) exodeoxyribonuclease V, beta subunit
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
bug  Burkholderia sp. CCGE1001
Pathway
bug03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bug00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BC1001_1364
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bug03400]
    BC1001_1364
Enzymes [BR:bug01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     BC1001_1364
DNA repair and recombination proteins [BR:bug03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BC1001_1364
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_30 DUF374 AAA_11
Other DBs
NCBI-ProteinID: ADX54800
Position
1:1553248..1556955
AA seq 1235 aa
MSAPHRHALAAAELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILVV
TFTKAATAELHERIRGRLAELHRAIELDDDGGDPFIRRLFETTLAPERGIDREAALKVVR
RALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQIEPV
AHAHPAFAAWLVGKRAGPASLDEQLARRLKKPLAQLRWGNTGAQTGADPQTSFDAACELW
HAERDAIVSLLAEAEDRLSKTTHKPDHVSAAIAAWTEYFAQGDCHAPPPRAALKLTASAL
KKATKVKFDPPEHAFFEHAEALSAAVVAAEAAHRARWLELMQSWLDYAPAELAARKRTRR
VVSFDDLLSNLYRALAAHPWLADALRARYPAALIDEFQDTDPLQFAIFSRIFAPAGPLFL
VGDPKQAIYSFRAADLHTYLAARASASARYTLAVNQRSTAPIVEACNRIFEANPQAFVLD
GLDYQPVRAGERRRAPFFDPDGGAGAGDFRIWMLPPGETALTKREAQREASEACAAEIVR
LLRGAREGKVTIGDAPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQASVFATLDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQTADAPAVADDPAHAADAMGW
VERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAAPDGERRLTNVNHLAELVQARAATH
QGIAPTLRWLAAQRAQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLR
EPPSSALPNAREYHDPCGDAVLHYGCDDEEAERAARHATREQAAERARLVYVALTRAVYR
CYLVAGTYQSSRSTKESRRSVLNWLVAGAGHDFDDWLAEPPGEAELSSRWQALAGGPLAV
QPLPKVERRQPLESMQDRGAEKRARTHRRPLRDQWRMASFSGLIAAGSKAEEAQPAVEEV
RPDHDEIADELVVTPQPLLAPAAQQISSLAADDILAFPRGAAAGECLHRMFELADFSDPH
SWPDAIRGALRERPAPASPELAPRLPAMMHKLLADVVSTELVPGMTLGQLDPRRRLNELE
FLFAAPSLDFTALRGLLVEHGYPDVALEPGGLRGFVKGFIDMIVEHDGRFWIVDWKSNHL
GDTAQDYGAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYSYETHIGGYLYLFVRGV
RPHWRDADAAAGVHARRPAFELVALLDAAMIGGGV
NT seq 3708 nt   +upstreamnt  +downstreamnt
atgagcgcgccgcatcgtcatgcgctggctgccgcggaactggatgtcttcgcgtgttcg
ctcgacggcgtcaatcagatcgaggcgtcggcgggcaccggcaagacatggaacatctgc
gcgctgtacgtgcggctgctgctcgaaaagaatctgaatgccgatcagattctcgtcgtc
acgtttacgaaggccgcgactgccgaactgcatgagcgcattcgcggacggcttgccgag
ctgcatcgcgcaattgaactcgatgacgacggcggcgaccccttcatccgccggctcttc
gaaacgacgctcgcgccggagcgcggcatcgaccgcgaggccgcgctgaaggtggtgcgg
cgggcgctgcgcacgttcgatcaggcggcgattcacaccattcacgcgttctgccagcgc
gcgctgcaggaggcgccgttcgcagcggctatgccgtttgccttcgaaatggaagccgac
gacgccgcgttacgcttcgaaatggccgccgatttctggcgcgagcaaatcgagcctgtt
gcgcatgcgcatcccgcattcgccgcgtggctggtgggcaaacgcgccggccccgcgtcg
ctcgacgaacagctcgcgcggcgcctgaaaaagccgctcgcccaattgcgctggggcaac
acgggcgcgcagacgggcgctgatccgcaaaccagtttcgacgccgcgtgcgagctgtgg
catgcagagcgcgatgccattgtcagcctgctcgcggaggccgaggaccgcctcagcaag
accacacacaagcccgaccatgtaagcgccgcgattgccgcatggaccgagtatttcgcg
caaggcgattgccatgcgccgccgccgcgggccgcgctgaaattgacggcttcggcgctg
aagaaggcgaccaaagtcaagttcgatccgccggagcacgcgtttttcgagcacgccgaa
gcgctgagtgccgccgtggtcgcggccgaagcggcgcatcgcgctcgctggctcgagctg
atgcagagctggctcgactatgcacccgccgaactggcggcacgcaagcgcacgcgccgc
gtggtgtcgttcgacgatctgctgtcgaacctgtaccgggctcttgccgcgcacccgtgg
ctcgcggacgcgttgcgcgcgcgttatcccgccgcgttgatcgacgagttccaggacacg
gatccgctgcagttcgccatcttcagccgcatttttgcgccggcggggccgctatttctg
gtcggcgatccgaagcaggccatctacagtttccgcgcagccgacctgcacacgtatctg
gcggcgcgggcctccgcttcggcgcgctatacgctcgccgtgaaccagcgttccacggcg
ccgatcgtggaggcttgcaatcgtatcttcgaagcgaatccgcaggccttcgtgctggac
gggctcgactatcagccggtgcgcgccggcgagcggcgcagagcgcctttcttcgatccc
gacggcggcgctggcgcgggcgacttccgcatctggatgctgccgccaggcgaaaccgcg
ctgaccaagcgcgaggcgcagcgggaagcgagcgaggcgtgcgcggccgagatcgtgagg
cttctgcgcggcgcccgcgagggcaaggtgacgatcggcgacgcgccgcttgcgccgggc
aatatcgcggtgctcgtacagacgcacaagcagggcagtctcatcaaacgggtgctggcg
gcgtggggcgtcggcagcgtcgagctcgcgcaggcctcggtgtttgcaacgctcgacgcg
gagcagatcgagcgcgtgctggccgctgtcgatacaccgggcgacttgcgccgcttgcgc
gccgccctcgcaaccgactggctcgggctcgacgccgccgcgctctggcgtcttgaacag
accgcggacgcgcccgctgtcgccgacgaccccgcacatgccgccgacgcgatgggctgg
gtcgagcgtttttcgcgctaccgcacgctctggcatgagcgcggttttgccgtcatgtgg
cgcacgctgatgcgcgaactgcgggtcgcgcaacggctcgtcgccgcgccggacggcgag
cggcgcctcaccaacgtcaatcacctcgcggaactcgtgcaggcgcgcgcggccacgcat
cagggcatcgcgccgaccttgcgctggctcgcggcgcagcgtgcccagggcggcggcgaa
gaagcgcaactgcggctcgagtccgatcgcaatctggtgcagatcgttaccgtgcacaag
tcgaaggggctggaatatgcagtcgtgttctgtccgttcctcaacgacggcggattgcgc
gagccgccctcgtcggctttgccgaacgcacgcgagtatcacgatccatgcggcgacgcg
gtgctgcactacggttgcgacgacgaagaggcggaacgcgccgcgcgtcacgccactcgc
gagcaggcggccgagcgggcgcggctcgtctacgtggcgctgacgcgcgccgtctaccgc
tgttatctcgtcgcgggcacgtatcagtcgtcgcgctcgacgaaggagtcgcggcgcagc
gtgttgaactggctcgtggccggcgcgggccatgacttcgacgactggctcgcggagccg
cccggcgaagcggagttgtcttcgcgctggcaggcgctggccggcggtccgctagccgtg
cagccgctgccgaaggtggagcgccgccagccgctcgagagcatgcaggaccgcggcgcg
gaaaagcgcgcgcggacgcatcgccggcccttgcgggatcagtggcgcatggcgagtttc
agcggtctgatcgctgcaggcagcaaggccgaggaagcgcagcccgcagtggaagaagtg
cgccccgatcacgacgaaatagccgatgagctggtcgtgacgccgcagcccctcttagcg
cctgcggcgcagcagatctcgtcgcttgccgcggacgacatactggcgttcccgcgcgga
gcggcggcgggcgagtgcctgcatcgaatgttcgaactcgcggatttcagcgatccgcac
agctggccggatgcgatccgcggtgcgctgcgcgagcgtcccgcgccggcgtcgcctgaa
ctggctccgcggttgccggcgatgatgcacaagctgctcgcggatgtcgtcagcaccgaa
ctcgtgcccggcatgacgctcgggcagctggatccgcggcggcgtctgaacgaactggag
tttctgttcgccgctccatcgctcgattttaccgcgctgcgtgggttgctcgtcgagcac
ggctatcccgatgtcgcgctcgagccgggggggctgcgcggtttcgtcaaaggattcatc
gacatgatcgtcgagcacgacgggcgtttctggatcgtcgactggaagtcgaaccatctg
ggcgataccgcgcaagattacggcgccgcgccgctcgaagcggcgatggcgagccacgcg
taccacctgcaggcgctgctttataccgtcgcgctgcaccgctatctgaagacccgcgtg
cgcgactactcgtacgagacgcatatcggcggatacctgtatctgttcgtgcgcggcgtg
cgtccgcactggcgcgacgccgacgcggcggccggcgtgcacgccagacggccagcattc
gagctggttgcgttgctcgacgcggcgatgatcgggggtggcgtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system