KEGG T01596: BurJV3

Stenotrophomonas maltophilia JV3: BurJV3_2990

Entry

BurJV3_2990 CDS T01596

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

buj Stenotrophomonas maltophilia JV3

Pathway

buj03410	Base excision repair
buj03420	Nucleotide excision repair
buj03430	Mismatch repair
buj03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:buj03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:buj03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:buj03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:buj03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3292183..3293790

AA seq 535 aa
MKAFAALYQRLDRSTATLDKRAALIDYFRQAGAHDAAWALYLLSGGKVGGARRKIAASGE
LRAWIAEESGLPPWLVEDSYAQVGDLAETLTLLLDDPPQPSLDRPLAEWIEQHLLAVANQ
PEAVRRVAVVAGWQQLCSSERLVFNKLLTGALRVGVSQRLVQQALAELSGLDIARIAQRM
LGEWVPSPGLLGQLLSPDELPLDRQQPYPFFLASPLEGEPAERLGPIDDWLLEWKWDGIR
LQLLRRRGEIALWSRGEERLDGRFPEIEQAAMALPDGCVLDGELLAWDEATDLPRAFTAL
QTRIQRRKPGAATLRNTPVRVLAYDLLEHDGADLRELPLRERRARLADIVGALGDGRIQL
SPDVAAEDWPQAAAMRDMARDRGVEGLMLKRRASPYQAGRRRGDWWKWKVDPLTIDAVLL
YAQAGHGRRSTLYTDYTFGVWDGDTLVPVAKAYSGLDDKEILALDRWIRANTRERFGPVR
SVRAEHVFELGFEAVNRSSRHKSGIAVRFPRILRWRHDKPASEADQLATLQALAR

NT seq 1608 nt +upstreamnt +downstreamnt
atgaaggccttcgcggcgctctaccagcggctggatcgcagcaccgccacgctggacaag
cgcgcagcgctgatcgattacttccgccaggcaggcgcgcatgatgcggcgtgggcgctg
tacctgctcagcggtggcaaggtgggcggcgcacgccgcaagatcgccgccagcggcgaa
ctgcgcgcctggattgccgaagaatccggcttgccgccatggctggtggaagacagctat
gcgcaggtcggtgacctcgccgagacactgaccctgctgctggatgatccaccgcagcct
tcgctcgaccgcccattggccgaatggatcgaacagcatctgctggcagtggccaaccag
cccgaagcggtgcgccgtgtggcggtcgtcgccggctggcagcagctgtgcagcagcgaa
cgcctggtattcaacaagctgctgaccggcgccctgcgcgttggcgtctcgcagcggctg
gtgcagcaggcactggcggagttgtccggcctggacatcgcgcgcatcgcccagcgcatg
ctgggcgagtgggtgccctcgcccggactgctgggccagctgctgtcgccggatgagctg
ccactggaccgtcagcagccctacccgttcttcctcgcatcgccactggaaggtgaacct
gccgaacggctcggtccgatcgatgactggctgctggaatggaaatgggatggcatccgc
ctgcagctgctgcgccggcgcggcgagatcgcattgtggtcgcgcggcgaagagcggctg
gatggccgcttccccgaaatcgaacaggcggcgatggcgcttcccgatggctgcgtgctg
gacggcgagctgctggcctgggacgaagccacggacctgccgcgtgccttcaccgcgctg
cagacccgcatccagcgccgcaagcccggtgcggccaccctgcgcaacacgccggtgcgc
gtgctcgcctatgacctgctggaacacgatggcgcggacctgcgtgagctgccgttgcgg
gaacggcgtgcacggcttgccgacatcgtcggtgccctgggtgatggacggatccagctc
tcacccgacgttgccgccgaagactggccgcaggcggcagcgatgcgcgacatggcacgc
gaccgcggcgtggaagggctgatgctgaaacgtcgtgcctcgccctaccaggccgggcga
cgccgcggtgactggtggaaatggaaggtcgatccgctcaccatcgatgcggtactcctg
tacgcgcaggccggccatgggcggcgcagcacgctgtataccgactacaccttcggcgtc
tgggacggcgacacgctggtaccggtagccaaggcctattcgggcctggatgacaaggaa
atcctcgcgctcgatcgctggatccgcgccaacacccgcgagcgctttggtccggtgcgc
agcgtacgcgccgaacacgtctttgaactgggcttcgaggcggtcaaccgcagcagccgg
cacaagtcaggtatcgccgtacgctttccgcgcatcctgcgctggcgccacgacaagccg
gccagcgaggccgatcagctggctaccttgcaggcgctggcgcgatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-BUJ (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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