KEGG   Paraburkholderia phytofirmans OLGA172: AYM40_01325
Entry
AYM40_01325       CDS       T05111                                 
Name
(GenBank) exonuclease V
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
buz  Paraburkholderia phytofirmans OLGA172
Pathway
buz03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:buz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AYM40_01325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:buz03400]
    AYM40_01325
Enzymes [BR:buz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AYM40_01325
DNA repair and recombination proteins [BR:buz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AYM40_01325
SSDB
Motif
Pfam: AAA_30 AAA_19 UvrD_C_2 PIF1 HHH_4 Viral_helicase1 NACHT SH3_13 AAA_11 AAA_22 DAO_C nSTAND3 IstB_IS21
Other DBs
NCBI-ProteinID: ANB71148
UniProt: A0A160FHB9
Position
1:complement(303453..305630)
AA seq 725 aa
MRAPFSATVVVERVLSQLDNGCIFSARCEDGSALRVKFSGKDTRPLTGDVLVVEGLLGEY
RDRFGKSVRQLESKRMQPAASHGALLGPWLAKLPNIGPTRAERLLHTFGNDLAAVLCDVD
RMNDVAAVIEPGKPALAARITAQIYAQMASQSSAQRSRAAEVEFLAFLEKLGIRETRLAH
QLWRLMSGESAIDRLKRNPYVPASLIDWKTADRVGLRLLRQADADGELGRHPTRLMGAMN
SVWRELLANGDTAATEEKVMSLLESRGVNPTEALRVIESNLALKRGQDLLRAPGAAWLED
QVTVALSATEARAPSLSVPAGTDLERLVDAAQTDAQLQLTDEQHAAIAKLLGLPVAVLQG
GAGVGKTTVMKVLTIAWESLGGDVVMGALAGKAALALSRGASSHSRPRLAYTIARLISML
EQQRDSAKRTRQPEVSFTSRTLLVIDEAGMMDTPSLYKLLSLLPPGARVLFSGDEGQLPP
VGIGKVFHDLVAEGSRVANLTKVLRQADDSVIPEVASQIRVGKQPTLQPWRGESKGVYLV
SPSQLWTVQRQLRDKRELMVVAARRKTVDDINFTESARRRTADTVTQRLGPLVEVAVGDP
IVATANRYAEGLFNGLLGTVTAVEGTDVSLLWDGETLPRNLSEEARSSIELAYAITCHKA
QGSSSEAVIVVVEDSVLVTREWLYTAITRGRELVLLVGEAADIQCSVDRRTIRTTGFQVP
ARLRS
NT seq 2178 nt   +upstreamnt  +downstreamnt
atgagagcgccattctctgcgaccgtcgtcgtcgagcgggtgctctcccaactagacaat
ggctgcatcttctcggcccggtgcgaggacggtagtgccttgcgggtcaagttctcgggt
aaggacacccgccccctaactggtgatgttcttgttgttgaagggctgctgggcgagtac
cgcgaccgcttcggcaaatccgttcgtcagcttgaatcaaaacgcatgcagcccgctgca
tcccacggcgcgctgctcgggccgtggctggcgaagttgccgaacattggtccgacgcga
gccgaacgcctgctccacacgtttggcaatgacctagcggccgtgctatgcgacgtcgac
cgtatgaacgatgtcgctgccgtcatcgagcctggcaagcccgcactggcggcacggatt
actgcccaaatctacgcgcaaatggcgtcgcaatcgagcgcgcagcgctcgcgtgctgcg
gaggtcgaattcctggcattccttgagaagctcggcattcgagagaccagactagctcat
cagctctggcgtctcatgtcgggcgagtcggccattgaccgcctaaaacgcaacccctac
gtgcccgccagcctcatagactggaagactgccgaccgtgttggcctgcgtctgcttcgg
caagctgatgcagacggcgagctgggccggcatccgactcgcctgatgggtgccatgaac
agcgtttggcgtgaactgctggcgaacggcgacaccgccgcgaccgaagagaaagtgatg
tcactcttggaatcgcgcggcgtcaaccctaccgaagcactgcgcgttatcgagagcaat
ctcgccctcaaacgtggccaagacctgctgagagcacctggagccgcgtggctggaagac
caagtgaccgtggcattgtcagcgacggaggcccgtgcgccaagcctttccgtgccagca
ggcacggacctcgagaggttggtagatgccgctcagacggacgcgcaacttcaactgaca
gacgagcagcacgctgccatcgcgaagctgctcggcctgcccgtcgcggttctacaaggc
ggtgccggcgtcggcaagactaccgtgatgaaggtcctgactatcgcatgggaatcgctg
ggcggcgatgtggtgatgggcgcgctggccggcaaggccgcattagcgctctcgcgagga
gcgtcatctcatagccggccacgcctggcctacacgattgccagactcattagcatgctc
gagcagcaacgcgactcagcgaagcgaactcggcaaccggaagttagctttaccagccgc
acgcttctggtcattgatgaggccgggatgatggacacgccgagcctctacaagctgctg
agtctgttaccgccaggggctcgcgtgctgttctccggcgacgaaggacaattgcccccg
gtcggtatcggcaaggtcttccatgacctcgtagcggagggctcacgcgtcgccaatctg
acgaaggtgttgcggcaggcagacgacagcgtgattcccgaggtcgcctcgcagattcga
gtcggaaagcaacccacgctccagccctggcgaggcgaaagcaaaggcgtctatttggtt
tcgcccagtcagctgtggacggtccagaggcaactgcgcgacaaacgtgaactgatggtc
gttgcagcgagacgcaagacagtcgacgacatcaacttcacggagtccgcgcggcgacga
accgctgacactgtcacgcaacgcctcggtcccctggtggaggtcgcagtcggcgacccg
attgtggcgacggcgaaccgctatgctgaggggttgttcaacgggttgctcggaacggtg
accgccgttgaagggaccgacgtttcgctattgtgggatggggaaacccttccgcgaaac
ctgtcggaagaagcccggagcagtattgagctggcttatgccatcacttgtcacaaggca
caaggtagctcgtcggaggctgtcatcgtggttgtagaggactctgtcctagtcacgcgg
gaatggctatatacggccattacgcgaggccgcgagcttgtcttgcttgtgggagaagca
gcggacatccaatgctctgtggaccgccgcacgattcgcaccacaggatttcaggttccg
gctcggctgcggagctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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