KEGG   Paraburkholderia phytofirmans OLGA172: AYM40_07940
Entry
AYM40_07940       CDS       T05111                                 
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
buz  Paraburkholderia phytofirmans OLGA172
Pathway
buz03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:buz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AYM40_07940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:buz03400]
    AYM40_07940
Enzymes [BR:buz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AYM40_07940
DNA repair and recombination proteins [BR:buz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AYM40_07940
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_30 Herpes_TK DEAD AAA_11 DUF374
Other DBs
NCBI-ProteinID: ANB72298
UniProt: A0A160FK02
Position
1:1850238..1853930
AA seq 1230 aa
MSGAVHHHALVAQELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRRRLAELDRAIDTDDDGGDPFIRRLFETTLAPERGIDRETALKVV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFDMAADFWREQVEP
VAYAHPAFAAWLVAKRAGPASLDEQLARRLKKPLAQLRWGKIDSGGNDADPQAGFDAACA
MWQAERDAIVSLLGQAQDRLSKTSHKPDLVSAAIAAWTEYLAQGDCHAPPPKAALKLTAS
ALKKATKIKFEPPEHPFFEHAEALAAAVVAAEAAQRARWLSLVETWLDYAPAELVARKRT
RRVVSFDDLLSNLYRALAANPWLADALRTRYPAALIDEFQDTDPLQFAIFSRIFAPAGPL
FLVGDPKQAIYSFRAADLHTYLAARAAASACYTLAVNQRSTAPIVEACNRLFEANPQAFV
LDGLDYQPVRAGERRRPPFSEPEASAGDFRIWTLPQGDAASTKREAQRAASEACAAEIVR
LLRGAREGSVTIGDAPLAPGNIAVLVQTHKQGSLIKRVLASWGVGSVELAQASVFATLDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWHLEQVADAPAPAGDPAHAADAMGW
VERFSRYRTLWHERGFALMWRTLMRELRVAQRLVAGPDGERRLTNVNHLAELVQARAATQ
PGIAPTLRWLAAQRTQGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGALR
EPPSSGLPDAREYHDETGGAVLHYGCDDEEAERASRYAAREQAAERARLVYVALTRAVYR
CYLVAGTYLSSRSTKESRRSVLNWLVGGGGHNFDDWLTDPPDEAALSERWRALAGGPITL
QALPKVERRVPLESLQDSGARMQARASRRPLRDQWRMASFSGLIAAGGKAEEAHTPVEEV
RPDHDEIADALVPAPLPVPQAPTYAEDDILAFPRGAAAGDCLHRMFELADFTDPHTWPDA
IRGALRERPAPAVSELAARLPAMMHKLIADVVTTELVPGMALARLNPRRRLNELEFLFAA
PSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEHDGRFWIVDWKSNHLGDTAA
DYAAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYAYDTHIGGYLYLFVRGVRPHWR
DADGAAGVHMRRPAFELVALLDAAMIGGVA
NT seq 3693 nt   +upstreamnt  +downstreamnt
atgagcggcgccgttcaccatcacgcgctggtcgcgcaagagctcgacgtcttcgcctgt
tcgctcgacggcgtcaatcagatcgaggcgtcggcgggaaccggcaagacctggaacatc
tgcgcgttgtacgtgcgcctgctgctcgaaaagaacctgaacgccgatcagattcttgtc
gtgacctttacgaaggcggcgaccgcggagttgcacgagcggattcgccggcggctcgcg
gaactggaccgggctatcgatacggacgacgacggtggcgatccgtttatccggcgcctc
tttgaaacgacccttgcgccggagcgcggcatcgatcgcgagaccgcgttgaaggtcgta
cgccgcgcactgcgcacgttcgaccaggccgcgattcacaccattcacgcgttctgtcag
cgtgccttgcaggaggcgccgttcgccgcggccatgccgttcgccttcgaaatggaagcc
gacgacgctgccttgcgtttcgacatggcggccgatttctggcgcgagcaggtagaacca
gtggcctacgcgcatcctgcgtttgccgcatggctggtggccaaacgcgccggccccgcg
tcgctcgatgagcaactcgcgcggcgcctgaagaagccgttggcgcagttgcgctggggc
aagatcgattcaggtggaaacgatgccgatccgcaggcgggtttcgatgctgcctgcgcc
atgtggcaggcggaacgagacgcgatcgtcagtctgcttggacaagcgcaggaccgtctg
agcaagacctcgcacaagcctgacctcgtgagcgccgcgatcgccgcgtggaccgaatac
ctcgcccagggcgattgtcatgcgccgccgcccaaggctgcgttgaagctgacggcttcg
gcgttgaagaaggccaccaagatcaagttcgaaccgcctgaacatccgttcttcgagcac
gcggaagcgctggccgcagccgtggttgccgccgaagccgcgcaacgcgcgcgctggctc
tcgctcgtagaaacctggctcgactacgcgcccgccgagctggtggcgcgcaaacgcacg
cgccgggtggtgtcgttcgacgatctgctgtccaacctgtatcgcgcgctcgcggccaac
ccctggcttgccgatgctttgcgcacgcgttatccggccgcgctgatcgacgagtttcag
gataccgatccgttgcagttcgcgatcttcagccgcattttcgcgccggccggcccgttg
tttctggtcggcgatccgaagcaggcgatctacagtttccgcgcggcggatttgcatacc
tatctggcggcacgtgcggcggcttcggcgtgctacacgctcgcggtcaatcagcgttcg
accgcgccgatcgtcgaggcctgcaaccggctgttcgaagccaatccccaagcgttcgtg
ctcgacggtctcgactatcagccggtgcgggctggcgagcggcgccgtcctcctttttcc
gaacccgaggcgagcgcgggcgactttcgcatctggaccctgccacaaggcgacgccgcg
tcgaccaaacgcgaagcacagcgcgcggcgagcgaagcctgcgccgcggagatcgtgcgg
ctcctgcgcggtgcgcgcgaagggtcggtgacgatcggcgacgcgccgctcgcgccgggc
aatatcgcggtgctcgtgcaaacgcataagcagggcagtctgatcaagcgtgtgctggcg
tcgtggggtgtcggcagcgtcgaactggcgcaggcctcggtgttcgcgacgctcgacgcc
gagcagatcgaacgcgtgctggccgcggtcgatacaccgggcgatctgcgccgtttgcgc
gccgcgctcgccaccgactggctcggcctcgatgccgccgcgttgtggcacctcgagcag
gtcgccgacgcgccggcgccagccggcgatcccgcgcatgccgcggacgcgatgggttgg
gtcgaacgtttctcgcgctatcgcacgctatggcacgagcgcggcttcgccttgatgtgg
cgcacgctgatgcgcgaactgcgagtcgcacaacgcctggtggccggaccggacggcgag
cgccgtctgacgaacgtgaatcatctggccgaactcgtacaggcgcgtgccgccacgcaa
cccggcatcgcaccgacattgcgctggcttgccgcgcaacgtacgcaaggtggtggcgaa
gatgcgcaattgcggctcgagtcggatcgcaaccttgtgcagatcgtcaccgtgcacaag
tcgaaagggctggaatatgcggttgtgttctgtccgtttctgaacgacggtgcgctgcgc
gagccgccatcctccggtttgcccgatgcgcgcgagtatcacgacgaaacgggcggcgcc
gtgctgcactacggttgcgatgacgaagaggccgaacgcgcgtcacgttacgccgcgcgc
gaacaggcggcggagcgggcgcggctcgtctatgtggcgctgacgcgcgcggtgtatcgc
tgctatctggttgccggtacttatctttcgtcgcgctccaccaaggagtcgcgccgcagc
gtgttgaactggctggtggggggcggcggtcacaactttgacgattggctcaccgatccg
cccgacgaagccgccttgtccgagcgatggcgcgcattggcgggcggcccgatcacgttg
caggcgttaccgaaagtggagcgccgtgtgccgttggaaagccttcaggatagcggcgca
cggatgcaggcgcgcgctagccggcggccgttgcgcgatcagtggcgcatggcgagcttc
agcggcttgatcgccgccggtggcaaagccgaagaggcgcatacgccggtggaagaggtg
cgtcccgatcacgatgagatcgccgatgcgctcgtacctgcgccgttgccggtgccgcaa
gcgccgacctacgcggaggacgacattctcgcgtttccacgcggcgcggcggcgggcgac
tgtctgcaccgcatgttcgaactcgcggatttcaccgatccgcatacgtggccggatgcg
atccggggcgctttgcgcgagcgcccggcgccggccgtgtccgaactcgcggcacgtttg
cccgccatgatgcataagctgatcgcggacgtcgtgaccaccgagctcgtccccggcatg
gcgctcgccaggctgaatccgcggcggcgcctgaatgaactcgaatttctgtttgccgcg
ccgtcgctcgattttccggcgttgcgcgagctgctgatcgaacacggctatcccgacgtt
gcgctggaacccggcgtgttgcgcggtttcgtcaaaggatttatcgacatgatcgtcgag
cacgacggacgcttctggatcgtcgactggaagtcgaaccatctgggcgacaccgccgcc
gactacgccgcggcgccgctcgaagcggccatggcgagccacgcgtatcacctgcaggcg
ctgctctatacggtggcgctgcatcgctatctgaaaacgcgggtgcgcgattatgcgtac
gacacgcacatcggcggctatctctacctgttcgtgcgcggcgttcgtccgcactggcgc
gatgccgacggggcggcgggcgttcatatgcggcggcctgcattcgaactggtggcgctg
ctcgatgcggcgatgatcggaggtgtcgcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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