KEGG   Bipolaris zeicola: COCCADRAFT_5476
Entry
COCCADRAFT_5476   CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
bze  Bipolaris zeicola
Pathway
bze03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCCADRAFT_5476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bze03019]
    COCCADRAFT_5476
Messenger RNA biogenesis [BR:bze03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     COCCADRAFT_5476
SSDB
Motif
Pfam: RNB Rrp44_S1 Rrp44_CSD1 OB_Dis3 PIN_4 CSD2 Dis3l2_C_term SIN1
Other DBs
NCBI-GeneID: 19150113
NCBI-ProteinID: XP_007712788
JGI: 5476
UniProt: W6YBJ0
Position
Unknown
AA seq 990 aa
MEYFSLKRSTAADRGQSNLSSKVYVRSTKSGKVQKIVRELYLRQDIPCSSNLCRACLEIA
PADYSKKTSPFVLSDTPAGSKHFPNGQYLVPDTNALLTGMDLFEVETAFHDVIVLQTVLE
EVKNRSLPLYHRLISLTKNEGKRFYVFFNEFRQETNVVREPGETINDRNDRAVRKAVQWY
NQHITDAVKAQSKTQTRIPTVVMITDDRDNLRKAKNEDVPGLTLSDFVSGLENSDELLDM
ISAAQEQREVRSKKAEVFYSEHYSVSKMMTGVKAGTLHQGIFNVSPYNYLEGSVHVPAFD
KSLLILGRENSNRAVSGDVVVVEVLPQDQWKAPSTKIIEEETVNKNDNAEAEEGENVIPV
RERRALQEEVKRVHGQSTEGRPQPTARVVGIIKRNWRQYVGHIDRDSVRSSSKSSRQQQT
VFLVPMDKRIPKIRIRTRQAGELLGQRVLATIDSWEKDSRYPVGHFVRSLGELESKGAET
EALLLEWDVQYKPFPKTVLDCLPAEGHDWKVPANMDDPGWRGRKDLRDLLVCSIDPVGCV
DIDDALHAHKLPNGNYQVGVHIADVSHFVKPNNAMDKEASQRGTTVYLVDKRIDMLPMLL
GTDLCSLKPYVERYAFSVIWEMTEDADIVASHFTKSVIRSREAFSYEQAQIRIDDQSQTD
DLTKGMRTLLMLSKKLKQKRMDAGALNLSSPEVKVRTESETSDPADVQTKKHLDTNSLVE
EFMLLANTSVAAKNYEAFPQTALLRRHAAPPKTNFEELDNQLKVKKGMEIKTDSSKALAD
SLDKCVDPNNPFFNTLVRIMATRCMMSAEYFCAGTQAYPEFRHYGLASEIYTHFTSPIRR
YADLEAHRQLAAAIEYEQLDASLQSKAKLEAVCKNINVRHRNAQMAGRASIEYYVGQALK
GKDINEEGFIMKIFSNGFVVFVPRFGIESLIRLRDLATPEPEADFDAENYVLNIKSDVKR
SVELFEKVTVRITDELEESTGKRKVKLSLV
NT seq 2973 nt   +upstreamnt  +downstreamnt
atggagtacttcagtctcaagcgctccacggctgccgaccgtggccaatcaaatctctcc
agcaaggtctacgtgcgatcaacaaaaagcggcaaagtccaaaaaattgtcagagagctc
tatctacgacaggacattccctgttcatcgaacctctgcagagcatgtctcgaaattgcg
cccgctgactactccaagaagacatctcctttcgtcctgtccgacacaccagcaggatca
aagcattttccaaatggccaatatctagttccagacaccaatgccctcctcacgggcatg
gacctgtttgaagtcgaaactgcctttcatgatgtcattgtgctgcaaaccgtgctcgag
gaggttaagaaccgctcgttgccgctttaccaccgcttgatatctctgactaagaatgag
ggcaagcgcttctacgtctttttcaacgagttcaggcaagagacaaatgtagtccgagag
cccggcgagacgatcaatgaccgcaatgaccgggcagtgcgcaaagctgttcaatggtac
aaccagcacatcaccgacgctgtcaaagcacaaagcaagacgcagactcgcatccccacc
gtcgtcatgattactgatgacagggacaatctgcgcaaagccaaaaacgaggatgtgcct
ggtctgacattatccgactttgtctccggcttggaaaactctgatgaacttctcgacatg
attagtgctgcgcaagaacagcgcgaagtcagatcaaaaaaggcagaagtcttctactcg
gagcactactccgtctcaaaaatgatgacgggggtaaaagccggaactttacaccagggg
atcttcaacgtttcaccatacaactacctcgaaggctctgtgcatgtacctgctttcgac
aagtcactcctcatcttaggacgtgaaaacagcaatcgtgcagtctctggtgatgttgtc
gtcgtcgaagtactgcctcaagatcaatggaaagcaccgtctacaaaaattatcgaagag
gagacagtgaacaagaacgacaacgctgaggcagaagagggggagaacgttattcccgtg
agggagcgacgagcattacaagaggaggtaaaacgggtccacggtcagagcacagaagga
cggccgcagccgacagcacgggttgtgggcatcatcaagcgtaactggcggcaatacgtg
ggccatatcgaccgcgactcggtccgttcttcatcaaaatcaagtagacagcaacaaact
gtcttcctcgtccctatggacaagcgcatacccaagatccgtatacgaacacggcaggct
ggagagctccttggtcagcgcgttctggcaaccatcgactcctgggaaaaagattcgcgg
tatccggttggccattttgttcgatcacttggtgaacttgaatcaaagggcgcagaaact
gaggctttactactcgagtgggacgtgcaatacaagccattccccaagacagtcttggat
tgtttacctgcggaaggccacgactggaaagtacccgctaacatggatgatccgggttgg
agagggcgcaaggatcttcgcgatcttctagtctgctctatcgatcctgtcggctgtgtc
gatattgatgatgctctccacgcccacaaactgccaaacggtaactaccaggtcggtgtt
cacatcgccgatgtatcacactttgtcaagccgaataacgcaatggacaaagaagccagt
cagcgtggaacgacggtatatctggtcgataaacgcatagacatgcttcccatgcttctt
ggaacagatctgtgctcgttgaaaccatacgttgagcgatacgccttctctgtgatttgg
gaaatgacagaggacgctgatattgttgcttctcacttcacaaagtccgtcattcgctca
agggaggcttttagctacgaacaagctcagattcgaatagatgaccagtcacaaaccgac
gacctaacaaagggcatgcggacgctgctcatgctctcgaagaagttgaagcaaaagcga
atggatgcaggagcactgaatctttcctcgccagaggtcaaggtccgaacggaatccgag
acgtcagacccagcagacgtgcagaccaagaagcatcttgacaccaactcgctcgtagaa
gagttcatgttgctcgccaacacaagtgtcgccgcgaagaactatgaggcctttccacaa
acagctctgttgcgccgtcacgcagccccgcctaaaacaaactttgaggagcttgacaac
cagctcaaggtgaagaagggaatggaaatcaagacggacagttccaaggctctggccgac
tcgctcgacaagtgtgttgaccctaacaaccccttcttcaacactctagtcagaatcatg
gctacacgctgcatgatgtccgcggagtacttttgcgcaggtacacaagcatatccagag
tttcgacattacggtctggccagcgaaatttacacccacttcacatctcctattcgtcgt
tatgctgatctcgaagcgcatcgtcagcttgctgctgccattgaatacgagcaattagac
gccagtttgcaatcaaaagccaaactcgaagccgtatgcaaaaacatcaatgttcgtcac
cgcaatgcccaaatggctggccgagcttcgatcgagtactacgtcggccaggcgctcaag
ggcaaggatatcaacgaggaagggttcatcatgaagattttttccaatggctttgtggtg
tttgtgccgcgctttggtattgagagccttatccgcttgagggatcttgcgactccagag
ccagaggccgacttcgatgctgaaaactatgtactcaatatcaagagcgatgtcaagagg
agcgttgaattgtttgagaaggtcactgtcaggattacggatgagcttgaagagagcact
ggcaagaggaaggtcaagttgagtctggtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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