KEGG   Clostridium acetobutylicum DSM 1731: SMB_G3480
Entry
SMB_G3480         CDS       T01548                                 
Symbol
polC
Name
(GenBank) DNA polymerase III (alpha subunit)
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
cae  Clostridium acetobutylicum DSM 1731
Pathway
cae03030  DNA replication
cae03430  Mismatch repair
cae03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SMB_G3480 (polC)
   03430 Mismatch repair
    SMB_G3480 (polC)
   03440 Homologous recombination
    SMB_G3480 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cae03032]
    SMB_G3480 (polC)
   03400 DNA repair and recombination proteins [BR:cae03400]
    SMB_G3480 (polC)
Enzymes [BR:cae01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SMB_G3480 (polC)
DNA replication proteins [BR:cae03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SMB_G3480 (polC)
DNA repair and recombination proteins [BR:cae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SMB_G3480 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII DNA_pol3_a_NI HHH_6 tRNA_anti-codon Rv2179c-like RNase_H_2 DEDDh_C HHH_3 Zn-ribbon_8 YhfH tRNA_anti_2
Other DBs
NCBI-ProteinID: AEI33229
Position
complement(3635790..3640148)
AA seq 1452 aa
MKKINEIFSDYGVNGNINSAVVESVVLKKKSKRLEMKISSDKYIEIKEFERLNEFIRKRF
ALNDSVIEVNYVDGTDKKPIEDEIKDIIFSMSDKHPVLKSVINNSECKVENNTINFNFKI
AAAEFFKSMKYDKHLQDAIKTLYGTSYNINFVDDITSEELMLQQEARDQEMLAISKQIKE
AIGSGGISNSSAPKAPKETTYKREDTKEETKGKKDPRLILGRNAKFKENVIKITDITPDE
GRVAIEGEISNIEAKELKSGKTLVSFDLYDGSSSMTCKSFLKPGEDGEVISRLKKAKGVR
LSGIAGYSKFSGEVEMIANVILETEGIRRAKRQDNAKEKRVELHMHTKMSQMDAMTSATD
LIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKIIYGVEAYLAPDKKPSVTNAK
DQSIDTTYCVLDLETTGFSPKTEKITEIGIMKYENGKVIDKFSLFVNPEKPIPARVVEVT
NITDDMVKNAETIDKVFPKMLEFIKGSVLVAHNASFDIGFLKHNAKVLGYEFDFTYLDTL
SLAQAVFPQYKSYKLGRIAKNLGIKVEVAHRALDDVDTTVKVFKVMLEILKERGAKTLED
VDIYSVDEESKKEEYKKLRTYHAIILAKNYVGLKNLYKLVSYSHLNYFYKRPRILKSLYK
KYSEGLILGSACSEGELFQAILLGKPDEEVEDIARDYDYLEIQPLGNDDYLIRNGQVPNK
EAIKDINRKIIELGEKLNKPVVATGDVHFIDPEDEIYRRILEAGQGFKDADNQAPLYLRT
TEEMLQEFSYLGREKAYEVVVTNTNKISDMCEQISPISPEKCPPHIDGCEQTIKDIAYEK
AHELYGDPLPEIVQQRLDKELESIIKNGFSVMYIIAQKLVWKSNEDGYLVGSRGSVGSSF
VANMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNGFDLPDKTCPVCGEPLTKDGIDIPFE
TFLGFNGDKEPDIDLNFSGEYQAKAHRYTEVIFGKGTTFKAGTIGTIAEKTAFGYVKKYY
EEKSIPVNKAEIIRISRGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDII
TTHFDYHSIDQNLLKLDILGHDDPTVIRMLQDITGINPHEIPMDDKETMSLFSSTKALGV
TPEQINSKVGTFGIPEFGTKFVRGMLLDTMPKTFSDLICISGLSHGTDVWLGNAKDLIDQ
GIVTLSEAVCTRDDIMIYLIKKGLPPNTAFKIMELVRKGKALKDPKKWAEYEALMREHEV
PEWYIDSCRKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFSIRAKAFDAEFMIF
GKEKVKQKMKEIQMMGNEAGPKDKDMYDDLEIVLEMYERGFNFLPIDIYKSHATKFLVEE
DGLRPPINSISGMGNVAAEGIYNAMQEEKPISSIQDLKKRAKIGNSAIDSLRKFGCLKGL
PESDQLSFFDAI
NT seq 4359 nt   +upstreamnt  +downstreamnt
atgaagaaaataaatgaaatttttagtgactatggggtaaatggtaatataaatagtgct
gttgtagaatcggtagttttaaagaaaaagagcaagagattggaaatgaaaataagctcg
gataaatatattgaaataaaggaatttgaacggcttaatgaatttataagaaagagattt
gcgttaaatgattctgtaattgaggtaaattacgttgatggaacagacaagaagcctata
gaggatgaaattaaagacattatattttcaatgtcagataaacaccctgttctaaaatca
gttataaataatagcgaatgtaaggtagagaataatactataaatttcaactttaaaatt
gcagctgcggagttctttaaatctatgaagtacgacaaacatcttcaggacgctataaaa
actctttatggtacttcatataatataaattttgttgatgatataacaagtgaggaattg
atgcttcaacaagaggcacgtgatcaggaaatgcttgctatttcgaagcagattaaagag
gccattggtagtggaggtataagtaatagttctgctccaaaagcgcctaaagaaactaca
tataaaagagaagatacaaaggaagaaacgaagggtaaaaaagatccacgcttaatattg
ggtagaaacgctaaatttaaagaaaatgtaataaaaattactgatataacaccagatgaa
ggaagagttgccatagaaggtgaaatatctaatatagaagccaaggaattaaaaagtgga
aagaccttagtttcttttgatttatacgatggatcaagttcaatgacctgtaaatctttc
ctaaagcctggtgaagacggagaggttatttctagacttaaaaaggctaagggggttagg
ctttcaggaattgctggctatagtaagttctcaggagaagttgagatgattgccaatgtt
atattagaaacagagggaattagaagagctaaaaggcaggataatgcgaaagagaagaga
gtagagcttcatatgcatacaaaaatgagtcagatggatgctatgactagtgctactgat
ttaattaagagggctatgagctggggaatgaagtccattgctataacagaccatggtgtt
gttcaggcatttccagaggcacataaactattaggaagagataatcctgatatgaagatt
atatatggagttgaagcgtacctagctcctgacaagaagccgtctgtaacaaatgctaaa
gatcaaagtattgataccacttattgtgtactagatttggagactacaggcttttctcct
aaaactgaaaaaattactgaaataggaattatgaaatatgagaatggtaaggtaatagat
aagtttagcttattcgtgaatcctgaaaaacctattccggcaagggttgtagaggttaca
aatataactgatgacatggttaagaatgcggaaacaatagataaggtttttccaaagatg
cttgaatttattaagggaagcgttttggttgctcacaatgcatcttttgatataggattt
ttaaaacataatgcaaaagtgctaggttatgagtttgactttacatacttagatacacta
tctttagctcaagctgtttttcctcagtataagagttataaattagggagaattgctaaa
aaccttggcataaaggtagaggttgctcatagggcgttagacgatgtggataccactgtt
aaagtgtttaaggtaatgcttgaaatattaaaagaaagaggagccaagactcttgaggat
gtagatatatattcagtagatgaagagtctaaaaaagaggagtataagaagcttagaacc
tatcatgcaataatattagcaaagaattatgttggtttaaagaatttatataagctagta
tcatattctcatttaaactacttttataaaagaccacgtatactaaaaagtctttataaa
aaatactcagaaggacttattttaggaagtgcttgtagtgaaggtgagcttttccaagca
atacttctaggaaagccagatgaagaagttgaggacattgctagagattatgattactta
gaaatacagcctttgggaaatgacgattatttaataagaaatggtcaggtgccaaacaaa
gaagctataaaggacattaatagaaaaattatagagctgggtgagaagcttaataaacca
gtagtggcgacaggcgatgtacacttcatagatccagaggatgaaatttatagacgtata
cttgaagctggtcaaggctttaaagatgcagataaccaggctccgctatatttaagaact
acggaggagatgcttcaggagttttcatacttaggaagggaaaaggcttatgaggtagtt
gttacaaatacaaataagatatcagatatgtgtgaacagattagccctatctcaccagag
aaatgtcctccacatatagatggatgtgagcagacaattaaggatattgcctatgaaaaa
gctcatgagctatatggtgatccactgcctgaaattgttcagcaaagactagacaaagaa
cttgaatcaattataaaaaacggattctctgtaatgtatatcatagctcaaaaattggtg
tggaaatccaatgaagatggatatttagttggttctagaggatctgttggttcctctttt
gtggcgaatatgacaggtataacagaggtaaactcgctgccaccacattatagatgtcct
aaatgtaagtactcggatttttcggattacggcgttaaaaatggatttgacttgccagat
aagacatgtccggtttgtggagagccattgactaaggatggtatagatataccgtttgaa
acctttctaggctttaatggagataaggaaccggatatagacttaaacttctctggagaa
tatcaagcaaaggcacatagatatactgaggttatctttggaaaaggaacgacctttaaa
gcaggaaccataggtacaatagcagagaaaacagcctttggatatgttaagaaatattac
gaggaaaagagtattccagtaaacaaagctgagataataagaatttcaaggggatgtaca
ggtataaaaagaactactggacagcatccaggaggtattatagttgtgccaaaagggaga
gagatttttgaattctgccctgtacagcatcctgccgatgatccaaattctgatattata
acaacacattttgactatcactcaattgaccagaacttacttaagcttgatatactagga
cacgatgatccgacggttataagaatgcttcaggatataacaggaataaacccacacgaa
atacctatggatgataaggagaccatgtcgcttttctcatcaacaaaagcactgggagta
acaccagagcagataaactctaaagtggggacatttggtattcctgagtttggtactaag
tttgtaagaggaatgcttttggatacaatgccaaaaactttttctgaccttatatgcata
tcaggactttcacatggtactgacgtgtggctaggaaatgccaaggatttaattgaccaa
ggaatagttactttaagtgaagcagtatgtaccagagatgatataatgatttatcttatt
aaaaagggacttccaccaaatactgcatttaaaataatggagcttgtacgtaagggaaaa
gctttaaaggatcctaaaaaatgggcagaatatgaagctttaatgagagagcatgaggtg
ccagaatggtatatagattcttgtagaaagataaaatacatgtttcctaaagcccatgct
gcagcttacgtaatgatggcatttagaatagcttggtttaaggttcatatacctaaggct
tactatgcagcatactttagtatcagagcaaaagcttttgatgcagagtttatgattttt
ggaaaagaaaaagtaaagcagaagatgaaggaaatccaaatgatgggcaatgaggctgga
cctaaagataaggatatgtatgacgatttagaaatagttttagaaatgtacgagagaggt
tttaattttcttcctattgatatatataaatctcatgctacaaagtttcttgtagaggaa
gatggcttgagaccacctataaacagtatatctggtatgggaaatgttgcagcagagggt
atatataatgcaatgcaggaggaaaaacctataagttctatacaggacttaaagaagcgc
gctaagataggaaattcagccatagattctcttagaaagtttggctgtttaaaaggactt
cctgaaagtgatcaattaagcttttttgatgcgatttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (27)   

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