KEGG   Candida albicans: CAALFM_CR08570WA
Entry
CAALFM_CR08570WA  CDS       T00189                                 
Symbol
SKI2, CaO19.6425
Name
(RefSeq) SKI complex RNA helicase subunit
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
cal  Candida albicans
Pathway
cal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CAALFM_CR08570WA (SKI2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cal03019]
    CAALFM_CR08570WA (SKI2)
Enzymes [BR:cal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CAALFM_CR08570WA (SKI2)
Messenger RNA biogenesis [BR:cal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     CAALFM_CR08570WA (SKI2)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     CAALFM_CR08570WA (SKI2)
SSDB
Motif
Pfam: DSHCT Ski2_N Ski2_beta-barrel DEAD MTR4_beta-barrel MTR4-like_stalk Helicase_C ResIII GT-D
Other DBs
NCBI-GeneID: 3642143
NCBI-ProteinID: XP_716263
UniProt: Q5A337
Position
R:1847067..1850804
AA seq 1245 aa
MIIEEVPTNDPLVVDPTTVTTYECPDLNAEERRQNLKTDLLNPSPEINWEILDLVNKPLE
INREKIIDKLVINPERLSRTQFRFKRSGIHGHITGYQEEVNLNELENSNTSLSINRGYSS
KSESLRGNTSFLPFQPGGLIQQAATEREPKDSGLNLHRNEHGLFDIPPGFVRGLEVGGGG
SGSGSLDIEPASSEEEKDSLEGVHISAASEAALNKSTILDGDVSKPKPTVPFDNKEIEGL
VPFDYSNFKYTDKKNALDKRTWAHVVDLDHKIEDFQELVPNMARTWPFELDTFQKEAVFH
LEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDID
VGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDIDRGVVWEE
VIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDIYVISTPKRPVPLEIFVSAKNQLFK
VVDANRRFQENEFRKHKDLLEGGGKKNELPSTTMGSGSRGGPGGTARGGNRGGRGGRGGQ
GRGGNANRGNFSGPKRFGRDGPKKNTWIDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLR
SVDFNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECI
EILFAKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRR
GLDKTGTVIVMAYDDPLSPTDFKEVVLGTPTKLSSQFRLTYSMILNLLRIEALKVEEMIK
HSFSENSTQVLLPENQKRYDEIKKQLQSSTITPCSKCSLEGTEETCNLLTEYENLYGECV
VDIHKSPVLKSQLLRVGRLVCFRDVNHNGARMGFVVKSDSANNAIVLLTFDHGKDYEEAI
EKYKLPYIPIRDYITKNFPKIKFSGRLRVVLVPYENICFIGRYSLKTSVNSIINNEKSAV
QEASEQIQILTKYQNSFEELAFKFTRQLSLHDLTVEKDQLLEKLKSSKAYVCPNFRQHYV
EYLDRYLLSQEVEKLERLISDENLELLPDYEQRLQVLEAMGYIDEQHNVVLKGRVACEVN
SGWELIITELVLNNFLGDFEPAEIVALLSCFVYEGRTQEEEPPLITPRLEKGKAKILEIA
EKLLKVYVEKQVSLTSEEEDFVESKRFALANVVYEWANGLSFNEIMQISVEAEGTIVRVI
TRLDEICREVKNAALIIGDSTLHLKMVEAQEKIKRDIVFCASLYL
NT seq 3738 nt   +upstreamnt  +downstreamnt
atgataattgaagaggtaccgacaaatgatccattggtggtagacccaacaactgttacc
acatatgaatgtccagaccttaatgcagaagaaaggagacaaaatttgaaaacagatcta
ttgaacccatcaccagaaattaattgggagatcttggatcttgtcaataaaccattagaa
atcaatcgagagaaaatcattgacaaattagtgattaatcctgagcgattgagccgtacg
caatttagattcaagagatctggtattcatggacacatcactgggtaccaggaagaagtc
aatttgaacgaattagaaaactccaacacttcgctaagcatcaatcgtgggtacagttct
aaaagtgagagtcttcgaggaaacaccagttttttaccatttcaaccaggagggttaatc
caacaagcagcaactgaaagagaacccaaagattcaggtttaaatttgcatagaaatgaa
catggactatttgatattccaccaggatttgtgcgtgggctagaagtaggtggaggagga
agtggaagtggaagtttggatatagaaccagcttcttccgaagaagaaaaagatagtttg
gagggggttcacatttctgctgcatctgaggcagcactcaataaatctacaattctagat
ggcgacgtgtcaaagccgaagccgacagtaccttttgataacaaggaaattgaaggattg
gtgccatttgattattccaatttcaagtataccgacaagaagaacgcattggataaacga
acttgggctcatgtagtagacttggatcataaaatcgaagactttcaagagttggtcccc
aatatggcacgaacatggccgtttgaattggatacattccaaaaggaagctgttttccat
ttggagcaaggtgattctgtgtttgtggctgcacatacttctgcagggaaaaccgtggtt
gccgaatatgctatagcgatggcacatcgaaacatgacgaaatgtatctacacgtctcca
atcaaagccttgtcgaatcaaaagttccgtgatttcaaagagactttcaaagacattgat
gtagggttgataaccggggatgtccaaatcaacccagaggctaactgtttaatcatgacc
acggagattttaagatcaatgttgtaccgaggagccgatttgatacgtgacgttgagttt
gtgatatttgatgaagttcattacgtcaacgatatagacagaggtgtggtgtgggaagag
gtcattataatgttgcccgaccacgtcaagtatattttattgtctgccactgtaccaaac
acgtttgaatttgctaattgggtcggaagaacgaaacagaaagacatatatgtcatctca
actcccaaaagaccggttcccttggagatctttgtatcagccaaaaaccaactattcaag
gttgttgatgccaaccgaagattccaggagaatgagtttagaaagcacaaggatttgcta
gaaggcggtggcaaaaaaaatgagttgccgtctacaaccatgggttccggaagtagaggc
ggaccaggtggaactgccagaggtgggaaccgtggcggccgtggcggtcgaggaggtcaa
ggaaggggaggtaatgccaatagaggtaacttttctgggcccaaaaggtttggccgagat
gggccaaagaaaaacacgtggattgatttggttaattatatgaaactgaataacttgttg
cctgcagttgtgtttgttttctctaaaaagagatgtgaagaatacgcagactccttgcgt
agtgttgatttcaataatgctcgtgaaaagtctgaaatccatatgtttattgaccgggca
gtgggaagattgaagaaggaagatcgtgaattgcctcaaattttaaaaatcagagaaatg
cttggtagaggtattgctgttcatcatggtgggttgttaccaattgtcaaagagtgtatt
gaaattctttttgccaaatcgttggtcaaagtattgtttgccactgaaacttttgctatg
gggttgaacttgcctacaagaacagttatattctcgtcaatgagaaagcacgacggtaga
agtttccgtaatttattaccaggggagtttacacaaatgtctggtagagccggtagaaga
gggttggataagaccggtacggttattgttatggcatacgacgatccattatcaccaact
gatttcaaggaagtagtgttaggcacacctaccaaacttctgtcgcagtttagattaact
tacagcatgattttgaatcttttgcgaattgaggcattaaaagttgaggaaatgataaag
cattcctttagtgagaattctacacaggtgttgcttccagaaaaccaaaagcggtacgac
gaaataaaaaagcagttgcaatcatcaacaataaccccctgtagcaaatgctctttggag
gggacagaagaaacatgcaatttattaacagagtacgagaatttatatggagagtgtgtt
gttgatatacacaaatcgccagttttgaaaagtcagttgttgcgtgtgggaagattggtt
tgtttccgagatgtaaaccacaatggtgcacgaatggggtttgtcgtcaagtcagatagt
gctaataatgctattgtgttattaacttttgatcacggcaaagactacgaagaagctatt
gaaaagtataaattaccgtatattcctattcgagattacatcaccaagaactttcccaaa
atcaaattttctggtcgtttgagagtggtgttggtgccatatgaaaacatttgctttatc
gggagatattcgctcaagacatcagtaaattcaattataaataacgaaaagtcagcggtg
caggaagcgtcagaacaaatacaaattttgaccaagtatcaaaacagctttgaagagttg
gctttcaaattcactagacagctatccttgcatgatttgacggttgaaaaagatcaatta
ctagagaaactaaaactgagtaaggcctacgtgtgccctaatttcaggcagcattatgtt
gagtatcttgatagatatttgttgtcacaagaagtggaaaaattggaacgattgatttct
gatgaaaacttggaattgttacctgattatgaacaaagattgcaagttttggaagcaatg
ggttatattgatgaacaacacaacgtagtgttgaaaggacgggttgcctgtgaagtgaat
tctggatgggaattgattattacagaattggtcttgaacaactttttgggagactttgag
cctgcagaaatagtggcgttattgtcgtgctttgtgtacgagggaagaacccaagaagaa
gaaccacctttaatcacaccaagattggaaaaggggaaggcaaagatcttggaaattgcg
gaaaagcttttgaaggtatatgtcgaaaaacaagtttctttgacactggaagaggaagat
ttcgtggagagcaaacgttttgcattggctaatgttgtatacgaatgggccaacgggttg
tcatttaatgaaattatgcaaattagtgttgaagcagaaggtacaattgtgagagtaatt
accagattggatgaaatctgccgtgaagtgaaaaatgctgccttaattattggagactct
acattacacttgaaaatggtcgaggcacaagaaaagattaaacgtgatattgtgttttgt
gcatcgttatatttatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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