KEGG   Calothrix sp. 336/3: IJ00_19180
Entry
IJ00_19180        CDS       T03937                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
calh  Calothrix sp. 336/3
Pathway
calh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:calh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IJ00_19180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:calh03019]
    IJ00_19180
   03009 Ribosome biogenesis [BR:calh03009]
    IJ00_19180
Enzymes [BR:calh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     IJ00_19180
Messenger RNA biogenesis [BR:calh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     IJ00_19180
Ribosome biogenesis [BR:calh03009]
 Prokaryotic type
  rRNA processing factors
   IJ00_19180
SSDB
Motif
Pfam: RNase_E_G zf-CCHC
Other DBs
NCBI-ProteinID: AKG23110
UniProt: A0A0T7BVL5
Position
4627609..4629675
AA seq 688 aa
MPKQIIIAEQHQIAAVYSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLRLRRTSAAITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVV
LMPYGRGVNLSRRIRNENERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLESLQK
QWELIQQEAQSTRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRSPILEYFRINAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMEARRDQLHVLEHFNKAL
RADKARPQIAQLTELGLVELTRKRQGQNIYELFGQTCTTCGGLGHIVRLPGESETKIPTP
SEAPPERFAPLPQREREPRLPVTRLAEPRETYEGFGESYDNDLEVTPLNLVNHPSYQEIG
DARKRRTRRSRIGITGGNGKDEPRVITPLGLPHDPDIDLDVETDLPGVDIPTPTLGKVGW
GERGDRAKSSRADLIKPVVEPPEIVSVEMTTDEQDVYALMGVSPLKKIEREFKNEKSVII
NIVQPGQVHSPAPEVETPTPVVSQPIVIRKSTITTPEPEPVIVEVKEETPVQEPSPVIVN
TTEETESNTVRRRVRRRSSAVTTDETDD
NT seq 2067 nt   +upstreamnt  +downstreamnt
atgccaaaacaaattattatcgccgagcagcatcaaatcgctgcggtttattctgaagat
cagatacaagaactagtagttgctacaggacatcaccaaataggtgatatttatctagga
gtagtagaaaatgtcctccctgggatagatgcagcttttgtcaatataggagacccagag
cgaaatggttttattcatgtcacagatttaggacctttacgtctacgccgcacctccgca
gccatcaccgaattgctgacaccccagcaaaaagtcctagtacaagtgatgaaggagcca
actgggacaaagggaccgagactcacagggaatattactttaccaggacgatatgtagtt
cttatgccctatgggcggggtgtgaatctttctcgccggattcggaatgaaaatgaacgc
aaccgtttacgagccttagcgatattaattaaacctgccggtatgggtttattagtacgt
acagaagcagaaggcaagcccgaagaagcaattatcgaagatttggaatcattgcaaaag
caatgggaattgattcaacaggaagcccagtccacaagagcgccagctctgctgaatcgt
gacgatgactttattcagcgcgtattgcgagatatgtacggtgcagatgtcaaccgtatc
gttgttgattccagtacaggcttaaaacgggtaaaacagtacctgcaaaactggagtggg
ggacagacaccgcaaggattactcatcgatcatcaccgcgatcgctcaccgattctagaa
tatttccgtatcaatgctgcgattagagaagctctcaaacccagggtagacctgccctct
ggtggttatattatcatccaacccacagaagccttaacagtaattgatgtcaactctggt
tcctttacccgttctgccactgccagagaaacagtcctctggacaaactgcgaagctgcg
acagaaattgctcgtcaactgcgtctgcggaatattgccggggtcatagttgttgatttt
attgatatggaagctagacgtgaccagctccacgtcctagaacattttaacaaagccctg
agagcagacaaagctcgtccccagatagcccagcttaccgagttaggtttagtagagcta
acacgtaaacgccaaggtcaaaatatttacgaactatttggtcaaacttgtactacctgc
ggtggtttaggtcatatagtgcgtctaccaggagaatccgagacaaaaatccctactcct
tcagaagctccaccagaacgttttgcccccttaccccagcgagaacgagaacccagatta
cctgtaactcgtctagcagaaccacgggaaacctatgaaggatttggcgaaagttatgac
aatgatttagaagttacacccttaaatttggtcaatcatcccagttaccaagaaattgga
gatgccagaaaacgccgtacccgtcgtagtcgtataggaataactggtggtaatggcaaa
gatgaaccacgagtaattactcccttgggactaccccatgatccagatatagacttagac
gtagagactgatttacctggagttgatattcccacacccaccttaggtaaagttggttgg
ggtgaaagaggcgatcgcgctaaaagttcgcgagctgatttaattaaaccagtagtagaa
ccaccagaaattgtctcagttgagatgacgactgatgaacaagatgtttacgctcttatg
ggtgtatctcccctgaaaaaaatagagcgggaatttaaaaatgagaaatcagtcatcatt
aatatagttcaacctggtcaagttcattcccctgctcctgaagttgagacacccactcct
gttgtcagtcaacccatagtcattcgtaaatcaactatcaccaccccagaaccagaacct
gttattgtcgaagtcaaggaagagactccagttcaggagccatctccagtcatagtcaac
accactgaagaaacagagagtaacactgttagacgtcgtgtccgtcgtcgttcttccgca
gtcacaacagatgagacagatgattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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