KEGG   Capsicum annuum (peppers): 107859743
Entry
107859743         CDS       T04646                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107859743
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cann03019]
    107859743
Messenger RNA biogenesis [BR:cann03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     107859743
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 107859743
NCBI-ProteinID: XP_016560320
UniProt: A0A1U8FNM0
Position
2:136520941..136524093
AA seq 855 aa
MEMDSSEDISKNADDTLRKVTSGPLPSTVAKLSGSSRGIPTDRDFHFYNNFSEFRTPISE
IDKKSKEILEKVGALSELWGKSISLPDDEEEAGEWLVNINDDVLEKLASSLDEFKLVRKE
EEEETGVKMMEDSESGGFQLVVGRKKNRKVDNAANVGKSEDKVKVAVKGKAKIPFHIPTI
PKPQEVYKIIVNNTNQPFEHVWLQRSDDGSRFTHPLEKFAPSDFVESAGGSIEPVKPPPL
EITPFKLVEEVKDLKQLAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTL
KLRVHIGPHLRDVFKDHKKKKVMHGADRDILWLQRDFGIYVCNMFDTGQASRVLKLERNS
LEYLLQHLCEVTANKEYQNADWRLRPLPVEMMRYAREDTHYLLYIYDVMRMKLLSSCAES
DGSPDTPLVEVYKRSYDICMQLYEKELLTDTSYQHIYGLQGAGFNAQQLAVVAGLHGWRD
VIARAEDESTGYVLPNKPLLEIAKQMPLTPSKLKLSMKSKHPYVERNLGSVVNIIRYSVQ
NSASYEAAVELLKERRLELQPEENIVATEGAEMSVELTEPLKATTGTETSNVKVGSSGPG
DTSERRNECGGLKATSSGQAEVTIQAIKKPSRGLGMLLGSTAKRKLHPDRKEPEDIQVQQ
IKASVSLPFHAFSGQEAATSPAKPLEINHKEEPVATKCKLDIATLENDSDAGKSVKGELS
TGEQYNSFAMPVATSKLEDVILLDTDSDVEEPVNDDSQVTDTAKLAEKPQAHESQLKVQP
FDYEAARKQVVFGEDPGKKQPEREGDEFRRSRKDKGDKKDLLVGEPPKIEGTAEFQQGRR
RQAFPASGNRSYTFR
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggagatggattcatctgaagatatctccaaaaacgccgatgatacgttacgcaaagtg
acaagcggtccgttgccatctacggttgcaaagctttccggttcttcaagaggaattccc
accgatagagactttcatttctacaataatttcagcgaattcagaacacccatttcagaa
atcgacaagaaatccaaggaaatcttggagaaagtaggggcattatcggaattatggggg
aaatctatatctcttccggatgacgaggaggaggccggtgaatggctggtgaacataaac
gacgacgttttggagaagctcgcctcgtcgttagatgagtttaagttggtaaggaaggag
gaagaagaggagactggagtgaagatgatggaagattccgaaagcggggggttccaattg
gtggttggtcggaagaagaataggaaagtagataatgcagcaaatgtggggaagagtgaa
gataaggtgaaagtagctgtgaaagggaaggcaaagattccatttcatatacccaccatc
cctaagccacaggaggtgtataagataattgttaacaatacaaatcagccatttgagcat
gtttggttgcagaggagtgatgatggttccaggtttacacatcctctggagaagtttgct
ccctcggactttgttgagagtgctggtggaagcattgagcctgttaaacctcctccatta
gagattactccattcaagcttgtggaagaggtcaaagatttgaagcagttagcagccaaa
ttgcggtctgtggatgagtttgcggttgatttggagcataatcaatatagatcttttcaa
ggattgacatgcttgatgcaaatatccactagaacggaagattttgttgttgacactctg
aagctccgggttcacattggtccacatttgagagatgttttcaaggaccacaagaagaaa
aaggtgatgcatggtgctgatcgagatattttatggcttcaacgtgactttgggatatat
gtctgcaatatgttcgatactggccaggcctcaagggttttgaaactggaaaggaacagt
ctggaatacctgctacaacatttgtgtgaagttacagcaaacaaagaatatcagaatgca
gattggagattacgcccgcttcctgttgagatgatgagatatgctagagaagatacgcac
tatctcttgtacatttatgatgttatgaggatgaaattgctctcttcgtgtgctgaaagt
gatggatctcccgatactcctctggtggaggtgtacaagcgcagttatgatatatgcatg
cagttgtacgaaaaagaacttttgactgatacctcatatcagcacatatatggattacaa
ggagctggcttcaatgcgcagcagcttgcagttgttgctgggctgcatggatggagggat
gttattgcccgagcagaagatgaaagtactggctatgtgttgcctaacaaaccacttctt
gaaattgctaagcagatgcctcttaccccaagcaaattgaagctatcaatgaaatcaaag
catccgtatgttgagcgtaatcttggttctgttgtcaacatcattaggtactctgttcaa
aattccgcttcatatgaagcagccgtggaacttctcaaggaaaggcgcctagaattacaa
cctgaagagaacattgtggctactgagggtgctgaaatgtcagttgaacttactgagcca
ctaaaagcaacaacagggacagaaacttcaaatgttaaagttggttctagtggacccggt
gacacatctgaacgtcgtaatgaatgtggtggtttaaaagctacttcttcgggacaggcg
gaagtaactattcaggcaattaagaaacccagtcgtggtcttggcatgttactagggagt
acagcaaagaggaagctgcatcctgatagaaaagagccggaagatatccaagtgcagcag
atcaaggcttcggtgagccttccattccatgcattttcaggacaggaagctgcaacaagt
cccgctaaaccattggaaattaaccataaagaggaacctgttgctaccaagtgcaagtta
gacattgcaaccctggagaatgattcagatgctgggaaatcagtgaaaggtgagctatca
acaggagaacagtataactcctttgccatgccggtagctacttcaaagttagaagatgtt
atcttactggatactgattcagatgttgaggaaccagtcaacgatgattcacaagttact
gacactgcaaagcttgccgagaaaccacaagcacatgaaagtcagttgaaggttcagcct
tttgactatgaagcggcgaggaagcaagtggtatttggagaagacccaggtaaaaaacag
ccagaaagagaaggtgatgagtttcgtaggagtaggaaagataaaggtgataagaaggat
ttattagtaggtgagccaccaaagattgaagggacagcagagttccagcaaggcagaagg
cgtcaagcttttccagcttcggggaatcgaagttatactttccgttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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