KEGG   Chloroflexus aurantiacus: Caur_2049
Entry
Caur_2049         CDS       T00639                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cau  Chloroflexus aurantiacus
Pathway
cau03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cau00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Caur_2049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cau03019]
    Caur_2049
   03400 DNA repair and recombination proteins [BR:cau03400]
    Caur_2049
Enzymes [BR:cau01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Caur_2049
Messenger RNA biogenesis [BR:cau03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Caur_2049
DNA repair and recombination proteins [BR:cau03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Caur_2049
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII AAA_22 SecA_DEAD
Other DBs
NCBI-ProteinID: ABY35261
UniProt: A9WEJ9
Position
2806320..2808011
AA seq 563 aa
MVTQQHPSTSNLPSEATVILRDVFGFSTFRPHQEQIIGRVLRGESTLAVLPTGAGKSLTY
QLPAQLLPQATVVISPLIALMKDQVDRLPPAVQERATIINSTLTAGEVRDRLRAIAAGKY
KLVYVAPERLRQRSFLFALRHCGVSRLVIDEAHCISLWGQNFRPDYLFINRAMNELGQPP
VLAVTATAASDTIHTLQTMIGPLTVVQAPVFRPNLFFQVIQVRPGMSKARSLIELCRKIN
GSIIVYARARQTCEDLALELRSAGVAADHYHALHPDRAGVQERFMNGKTRVLVATVAFGM
GVDKADIRAVIHYNLPASLEAYYQEAGRAGRDGLPARCILFFSENDARVLRTWLQSTTIT
RENLRELYRQVRRTITYPAGVIDLDALQSQFGPAGEVLTRVGISVLEQVGLLKRHFDLPL
AAVVERTGTVAATDWLHHLPREAIEIDLMLLAHQHNIPVAHIEAVLLEAQAAGLLRYRPG
LRLPLIELLSPPADAGERVEGWLERFRQYQEQRIESMVDYARSQRCRHQILAAYFGQQLA
ACRIGCDVCSSSRALKVGRREWH
NT seq 1692 nt   +upstreamnt  +downstreamnt
atggtcactcagcaacatccctctacctcaaacctgccatctgaagccaccgtcattttg
cgcgatgtttttggtttcagtacgttccgccctcatcaagagcagattatcggccgtgta
ttgcgtggcgaatcgaccctggccgtcttaccgaccggtgccggcaagtcgttgacctat
cagttaccggcccagcttttaccacaggccacagtggtgattagccctttgatcgcgtta
atgaaggatcaggtagaccggttaccacctgccgtccaggaacgggcaaccatcatcaac
tccacccttaccgcaggagaggtgcgcgaccgcttacgggcaattgctgccggtaagtac
aaactggtttatgtcgctcccgaacgcctgcgacaacgctcattcctttttgcgcttcgt
cactgtggcgtgtcccgtcttgtgatcgacgaggcgcactgtatcagcttatggggacaa
aattttcgccctgattatttgttcatcaaccgggcgatgaacgaactcggccaaccgcca
gttctggctgtgacagctacggctgcctctgatacgatccatacgctgcaaacgatgatc
ggcccgctgacggtcgttcaggcacctgtctttcgccctaacctgttttttcaggtgatc
caggtgcgaccagggatgtcaaaggcacgtagtctgattgaactctgccggaagatcaat
ggctcaatcatcgtgtatgcccgtgcgcgccagacttgtgaagacctggcgctggagctg
cgttctgccggtgttgctgccgatcactatcacgctctgcatcctgatcgagcaggtgtg
caagagcggttcatgaacggaaagacgcgggttctggttgcgacagtcgcgtttgggatg
ggggttgacaaagccgatattcgtgctgtcatccactacaatcttcccgcctcactcgaa
gcctactaccaggaggcgggccgggccgggcgtgatggcttgccggcgcgctgtattctc
tttttcagcgagaatgatgctcgtgtattgcggacctggttgcaatcaacgacaattacc
cgcgagaatctgcgtgagttgtaccgtcaagtcaggcgtacaatcacctatcccgcaggt
gtgattgatcttgatgcgttacaatcccagtttggtcccgctggtgaagtgctgacgcga
gtcgggatcagtgtcttggaacaggtaggtctgctcaaacgtcatttcgacctgccgctg
gcagcggtggtcgaacgaaccgggacggtagctgccacagactggttacaccatcttcca
cgggaagcgattgaaatcgatctcatgctccttgcccatcagcacaacattccggtagct
cacattgaagcagtgttgttagaagcgcaagccgctggcctgctacgttaccgaccggga
ctacgcctgccgctcattgaactcttgtcaccgccagccgacgcaggcgagcgtgtcgag
ggctggctggaaaggttccggcaatatcaggagcagcggattgagtccatggtcgattac
gctcgcagtcagcgttgccgacaccagatactggcagcgtattttggtcaacaacttgcc
gcctgtcgtatcggttgcgacgtctgctcctcatcacgggcacttaaagttggcaggcgc
gagtggcattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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