KEGG   Berryella intestinalis: JI75_02300
Entry
JI75_02300        CDS       T03545                                 
Name
(GenBank) DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
cbac  Berryella intestinalis
Brite
KEGG Orthology (KO) [BR:cbac00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbac03032]
    JI75_02300
   03400 DNA repair and recombination proteins [BR:cbac03400]
    JI75_02300
Enzymes [BR:cbac01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     JI75_02300
DNA replication proteins [BR:cbac03032]
 Prokaryotic type
  DNA Topoisomerases
   JI75_02300
DNA repair and recombination proteins [BR:cbac03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      JI75_02300
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim Toprim_4
Other DBs
NCBI-ProteinID: AJC11683
UniProt: A0A0A8B4F1
Position
544256..546814
AA seq 852 aa
MKLVVTEKNDAAEKIADLLGASKPTKDKVFSTPVYRFTIDGEEWVTIGLRGHILEPDFTP
TLVYKKSKGWQGVTAEGEVVAAQLPSDLEKPPYKTKRKPFLPDGIELKSWKMDALPYLVY
APIEKLPKEKDIIRSLKNLAKKCDSVIIATDFDREGELIGSDALSCIQEVNPTAPVSRAR
YSAFTKEEITHAFSNLVELDRDLASAGASRQDIDLIWGAVLTRYLTLVKFAGYGNVRSSG
RVQTPTLALIVAKERERMAFVPEDYWVIQGSFGSGEGEFTAPHATARFKVQAEAEAVMGR
VAKASVASVAAVESKKRTVRPPAPFNTTSLMAAAAAEGISPARTMRIAESLYMDGYISYP
RVDNTVYPSSMSLEETVRTIAGNPAYTEYCEALLRKGKLVATRGKQETTDHPPIYPTSKA
TPDDMPAANYKLYNLIARRFLATLSEAAVIEGTKVSLDVAGESFAARGDVLVKPGFRAIY
PYGLKKDEQLPALSVGDTVAFNGATCTKKQTEPPARYSQGRLIQEMEKLGLGTKSTRHAI
IERLYNVKYIQNDPIEPSQLGMAVCDALDKYAPHITHPEMTAELEQEMNNIAEGKTTKGD
VVLDSRNRLASQLQALLPKAEEVKEALADAVAADAYVGVCPKCGKDLQIRASQKTKSMFI
GCSGWPDCDVTYPLPKGKIESVPELCPTCGMPQVKVTAFRSKPRVVCIDPNCATNQEPDV
VVGECPTCRAAGKTGKLIAQRNPRTLKRFIRCENYEECETSYPLPQYGNLTATEEVCEHC
GAPMVIVTTARGPWKLCPNFDCPGKEKDGQDGKAASGKGRASKKAPAKKAPAKRSASKKA
APKASAESESAE
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgaaacttgtggtcaccgagaaaaacgacgccgccgagaagatcgccgatctgctgggc
gcatcgaagccgacgaaggacaaggtgttctcgacgccggtttaccgcttcaccatcgac
ggggaggaatgggtcaccatcggccttcgcgggcacattctcgagcccgacttcactccc
acgctggtgtacaagaagtccaagggttggcagggggtgacggcggaaggggaagtcgtc
gccgcacagcttccctccgacctcgaaaagccgccgtacaagacgaagcgcaagccattc
ctccccgacggcatcgagctgaagtcgtggaagatggacgccctgccgtacctggtgtac
gcgcccatcgagaagctccccaaggaaaaggacatcattcggtcgcttaagaacctggcg
aagaagtgcgattcggtcatcatcgccaccgacttcgaccgcgagggagagctcatcggc
tccgatgccctcagctgcatccaagaggtcaatcccaccgccccggtcagccgggcccgc
tattccgcgttcaccaaagaggagataacgcatgcgttctccaacctggtggagctcgac
cgcgacctcgcttcggcgggggcgtcgcgccaagatatcgatcttatctggggcgctgtg
ctcacgcgctacctcacgctggtcaagttcgccgggtacggcaacgtgcgctcgtcgggg
cgcgtccagacgcccacgctcgccctcatcgtggcgaaggagcgcgagcgcatggcgttc
gtgcccgaggactactgggtcatccagggctcgttcgggtcgggcgaaggcgagttcacg
gctccgcacgccacggcgcgcttcaaggtccaggccgaggccgaggcggttatgggccgc
gtggcaaaggcgagcgtcgcctcggtggccgccgtcgagagcaagaagcgcacggtgcgc
ccgcccgccccgttcaacaccaccagcctcatggccgcagccgccgccgagggcatcagc
ccggcgcgcaccatgcgcatcgccgagagcctctacatggacggctacatctcctatccg
cgcgtcgacaacacggtgtacccgtcttccatgagcctcgaggaaacggtgcgcaccatc
gccggcaaccccgcctacaccgagtactgcgaggcccttctgaggaagggcaagctggtg
gccacgcggggcaagcaggagaccaccgaccacccgcccatctatcccacgtcgaaggcg
acgcccgacgacatgcccgcggcgaactacaagctgtacaacctcatcgcccgccgtttc
ctggcgacgctttccgaggcggcggtcatcgagggcaccaaggtgtcgctcgatgtggcc
ggcgagtcctttgccgcgcgcggcgacgtgctggtcaagccgggttttcgcgccatctac
ccgtacgggttgaagaaagacgagcagctgcccgcgctttcggtgggcgataccgtggcg
ttcaacggcgcgacctgcacgaagaagcagaccgagccgcccgcgcgctactcgcagggg
cgccttatccaggagatggaaaagctcggactgggaaccaaatcgacccgccacgccatc
atcgagcgcctctacaacgtgaagtacatccaaaacgatccgatcgagccgtcccagctg
ggcatggcggtgtgcgatgcgctggacaagtacgcgccccatatcacgcaccccgagatg
acggccgagctcgagcaggagatgaacaacatcgccgagggcaagaccaccaaaggcgac
gtcgttttggactcgcgcaaccgcctggcaagccagctgcaggcgcttcttcccaaggcc
gaggaggtgaaagaggcgcttgccgacgcggtggcggccgacgcgtacgtgggcgtatgc
ccgaagtgcggcaaggatctgcagatacgcgcatcccagaaaaccaagtcgatgttcatc
ggctgttcggggtggcccgactgcgacgtcacgtacccgcttcccaagggaaagatcgag
tcggtgcccgagctttgcccgacctgcggcatgccccaggtgaaggtgacggcgttccgc
tcgaagccgcgcgtggtgtgcatcgacccgaactgcgccaccaaccaggagcccgacgtg
gtggtgggcgagtgcccgacgtgcagggccgccggcaagacgggcaagctcatcgcccag
cgaaacccccgaaccctgaagcgcttcattcgttgtgagaactacgaggaatgcgagacg
agctacccccttccgcagtacggtaacctcacggcaaccgaagaggtctgcgagcactgc
ggcgcgcccatggtgatcgtcaccacggcgcgcggtccgtggaagctgtgcccgaacttc
gactgcccgggcaaggagaaggacggccaggacggcaaggccgcaagcggcaaggggcgc
gcttccaagaaagcgcccgccaagaaggcgcctgcgaagcgctctgcgtcgaagaaggcc
gcgccgaaggcttctgccgaaagcgaatctgcggaatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (38)   

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