KEGG   Clostridium botulinum A Hall: CLC_1048
Entry
CLC_1048          CDS       T00575                                 
Symbol
recQ
Name
(RefSeq) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cbh  Clostridium botulinum A Hall
Pathway
cbh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLC_1048 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbh03019]
    CLC_1048 (recQ)
   03400 DNA repair and recombination proteins [BR:cbh03400]
    CLC_1048 (recQ)
Enzymes [BR:cbh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CLC_1048 (recQ)
Messenger RNA biogenesis [BR:cbh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CLC_1048 (recQ)
DNA repair and recombination proteins [BR:cbh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CLC_1048 (recQ)
SSDB
Motif
Pfam: RQC DEAD HTH_40 Helicase_C HRDC RecQ_Zn_bind ResIII Trans_coact AAA_30 Helicase_Sgs1 GerE HHH
Other DBs
NCBI-GeneID: 5398480
NCBI-ProteinID: YP_001386916
UniProt: A5I0I7
Position
1067116..1069245
AA seq 709 aa
MLEDAKNLLKKHFGYNEFRKAQEKVIESILKKEDTVAIMPTGAGKSICYQIPALIFEGVT
VVISPLISLMKDQVDSLKEVGIEATYINSSLNNLEIEERIFNAREGLYKLIYIAPERLES
DSFVRSLNNLNIALVAVDEAHCVSQWGHDFRPSYTKISNFIRKLSKRPIVTAFTATATET
VRRDILNSLELQNPKVFVTGFDRENLSFSVIKGEDKEKFIFGYLESNIGKVGIIYTSTRK
EAESLYNKINKKGYKVGVYHAGLNDEERKKTQEDFSFDNIEIIVATNAFGMGIDKSNVRF
VIHHNIPKNMEAYYQEAGRAGRDGEESECILLFSPNDIRLQKYFIDESFLSPERKNNEYN
KLRAMVDYCYTSKCLRSYILEYFGEDALEEKCNNCSTCNDNREEKDITLEAQKIFSCVYR
MKERFGVNMVADVLRGSKNKKLLSLDLDGLSTYGIMEESTQKDIVALMNKLIADDYMVTT
DDKFPVVRLRQKSYDVLKGKEIVSIKVSKIEKKVKADNELFEILKQLRKTISQEESVPPF
MIFPDATLKELSEYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDS
YGSAKSNKESKIKTHVLSYNLYKEGKTIKEISEERNLKAITIQEHLFKCLSEGMEVDLDN
FIKKDYEKLILDTIKKVGGTKLKPVKDELPPEVDYMCIKSVWYKYKDII
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgttagaggacgctaaaaatttactaaaaaaacattttggatataatgaatttagaaaa
gctcaagaaaaggtaatagaaagtattctaaaaaaagaagatacagtagctattatgcct
acaggagcaggaaaatcaatatgttatcaaatacctgcattgatctttgaaggggtaacg
gtagtaatatctcctcttatttctcttatgaaagaccaagtagattctttaaaagaagtt
ggaatagaggctacatacataaatagttctctaaataatttagaaatagaggaaagaata
tttaatgcaagggaagggctttataagcttatttatatagctccagaaagattagaatct
gatagttttgtaagaagtttaaataatttaaatatagctttagtagcggtagatgaggca
cattgtgtatctcagtggggacatgactttagacccagttatacaaaaataagtaatttt
ataagaaaattatctaaaagacctattgtaacagcatttacagctacagccacagaaact
gttagaagggatatattaaatagtttagaacttcaaaaccctaaggtatttgtaacaggc
tttgatagagaaaatttaagcttttctgttataaagggagaagacaaagaaaaatttata
tttggttatttggaaagtaatataggtaaggtaggtataatatatacatctacaagaaaa
gaagcggaaagtttatataacaagataaacaaaaaaggttataaagtaggagtatatcat
gcagggctaaatgacgaggaaagaaagaaaacacaagaagatttttcttttgataatata
gaaataatagtagccactaatgcatttggcatgggaatagataaatctaatgtaagattt
gttatacatcataacatacctaaaaatatggaagcttactatcaagaagcaggacgtgct
ggaagggatggagaagaaagtgaatgtatattattattctctcctaatgatattcgtctt
caaaaatattttatagatgaaagctttttatcaccggaaagaaaaaataatgaatataac
aaattaagagctatggtagattattgctatacctcaaaatgtttaagatcttatatatta
gaatattttggggaagatgctttagaagaaaaatgtaataattgtagtacttgtaatgac
aatagagaagagaaggatataaccttagaagcacaaaagatattttcctgtgtttataga
atgaaggaacgttttggtgtaaacatggtagcagatgtgcttagaggatcaaaaaataaa
aagcttttatccttagatttagatggattatctacttatggcattatggaggaatctact
caaaaggatatagtagctttgatgaataaactaatagcagatgattacatggtaactaca
gatgataaatttcccgttgtaagattaaggcaaaaatcctatgatgtgttaaaagggaaa
gaaattgtatctataaaggttagcaaaatagagaaaaaagtaaaagcagataatgaatta
tttgagattttaaaacagttaagaaaaacaatatctcaagaggagtctgtaccaccattt
atgatattcccagatgctactttaaaggagcttagtgaatatatgcctacaaaagaggaa
gatttattaaaaattaaaggtataggtgaaagaaaagctaaggtttatggagaaaggttt
atagaagctattacagaatatatgaatgaaaagggaatagatattaataatatggatagt
tatggaagtgcaaaaagtaataaggagtctaaaataaagacccatgtattaagctataac
ctatacaaagaaggaaaaacaataaaagaaatttcagaggagcgaaacctaaaagctata
actatacaggagcatttatttaagtgtttgtcagaaggcatggaagttgacttagataat
tttataaaaaaagattatgagaagctcatattagatactataaaaaaagttggcggaaca
aagctaaagccagtaaaggatgaattaccaccagaagtggattatatgtgtataaaatcc
gtatggtataaatataaagatataatttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (24)   

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