KEGG T01865: CBF

Clostridium botulinum F 230613: CBF_2844

Entry

CBF_2844          CDS       T01865

Name

(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

cbm Clostridium botulinum F 230613

Pathway

cbm03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:cbm00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBF_2844
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbm03019]
    CBF_2844
   03009 Ribosome biogenesis [BR:cbm03009]
    CBF_2844
Enzymes [BR:cbm01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CBF_2844
Messenger RNA biogenesis [BR:cbm03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CBF_2844
Ribosome biogenesis [BR:cbm03009]
Prokaryotic type
  rRNA helicases
   CBF_2844

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII Flavi_DEAD AAA_22 AAA_19

Other DBs

NCBI-ProteinID:

ADG00467

Position

complement(2989929..2991503)

AA seq 524 aa
MENKNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGA
PVISALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKD
IKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEK
QTMLFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICRII
DSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLV
ATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQI
ERITKSKITKKELPTLEDILEKKYDNLLNDITSKIEENKYEKFMPMVKTLEQNFDLSEVS
AALMEMLFSKEMSFDYTNNKLEAEVPVRLFLSVGRKDSINVKSLLTFIQDSSSVKNHEIG
DIDILDKFTFMDVSSGTAEKIINKCSGKKLNRRKVNIEIAKSKK

NT seq 1575 nt +upstreamnt +downstreamnt
atggaaaataaaaactttgaaaatttgaacttaaatgaagatgtactaaaagctatacaa
catatgggatttgaaactccatctgcaatacaagaaaaatcaattccagtagtattagaa
ggagcagatgttatagctcaagctcaaacaggaacaggtaaaaccttagcttttggagct
cctgtaataagcgctttgtgtgacaaggaaaagaaaaaaggcgtaaaagctttagtatta
acacctacaagagaactagcccttcaaataaaagatgagctaaagagattatctaaatat
agtaaaacaaaagtacttcctgtttatggcggagagtctatagaaagacaaataaaagat
attaaaagtggagtagacatagtggttggaactccaggaagagtattagaccacattaat
agaagaactttaaagcttggaggtattgatttcctaattttagatgaagcagatgaaatg
cttaatatgggatttatagaagatatagaaactataatggaaagtacttctgaagaaaaa
caaactatgcttttttcagcgactatgccagcacctattaagaaattagctttaaactac
atgaaaaaagatgtagagcatatagctatagtaaaaaaatctttaacagtagataaaata
gcacaacattattttgcagtgaaaaataaggataaactagaagctatatgtagaataata
gattcagaagaaccagaaagtgctataatattttgtagaacaaaaagaggcgttgatgaa
ttagttgaagctatgcaatcaaagggatacaatgtagaaggtatgcatggagacatgagc
caaaatcaaagaataaatactttgaaaaaatttaaaaaagctactttaaactttttagtt
gcaacagatgtagcggctagaggtatagacgtagaaaatatatctcatgttataaattat
gatatacctcaagatgcggaatcctatgttcatagaataggaagaacaggaagagctgat
aaagaaggaacagcctattctttagttacccctagagaagtatcttctattagacaaata
gaaagaataactaagagcaaaattactaaaaaagaattacctactttagaggatatacta
gaaaagaaatatgataatttattaaatgatataacttctaaaatagaagaaaataaatat
gaaaaatttatgccaatggtaaaaactttagaacaaaattttgatttatctgaagtttca
gcagctttgatggaaatgctatttagtaaagaaatgagctttgattatacaaataacaaa
ctagaggcagaagttccagtaagattatttttaagcgtaggaagaaaagatagtataaat
gtaaaaagtttattaacatttattcaagattcatcctctgtaaaaaatcatgaaattgga
gatatagatatattagataaatttacttttatggatgtatcatcaggcactgcagaaaag
ataataaataaatgttcaggtaaaaaattaaatagaagaaaagttaatatcgaaatagct
aaaagtaaaaagtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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