KEGG   Caenorhabditis briggsae (nematode): CBG_09607
Entry
CBG_09607         CDS       T01054                                 
Symbol
Cbr-pap-1
Name
(RefSeq) Protein CBR-PAP-1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CBG_09607 (Cbr-pap-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_09607 (Cbr-pap-1)
Enzymes [BR:cbr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     CBG_09607 (Cbr-pap-1)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     CBG_09607 (Cbr-pap-1)
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 Nrap_D2 DNA_pol_B_palm
Other DBs
NCBI-GeneID: 8579103
NCBI-ProteinID: XP_045094004
Position
V:10603134..10605394
AA seq 668 aa
MAASVTDRTPHLGVSQPISTLRPDQKDIVMTDQLIATLKKFNSYEPKEETEKRMEVLRSL
NRLVKEWVKKVTAIKIPSGEGANAGGKLFTFGSYRLGVHSSGADIDTLAVVPRHIDRTDF
FTSFKEMLRQDPNVTELHGVEEAFVPVMKLKYSGVELDILFARLALKEVPDTQDLFDDQL
LRNLDQESVRSLNGCRVAELLLKLVPRQKEFCIALRAIKLWAKNHGIYSNSMGFFGGISW
AILVARACQLYPNASASRIVHRMFFIFSTWTWPHPVLLSALDQDRNDIPTLCDLIWDPRK
KNSDRFHLMPIITPAFPEQNSTHNVTRSTCHIIRNEICEGLEICKDITEGKATWEDLFKE
VKFFSRYKHYIGMFFFLNCDHNLSAYLSSDHGYIHRRRGIELWRFLESRIRLLVQSLERN
QDILIAHNDTNKHRPSPNAKFDVRPENTRITIWFIGLEFAEHATNLDLTSEIQRFRTNVE
LQASGVKGIGPNSQVEIDMFYMKRTRLFSIIGAAALKKGRDWKPPKNPPPPMGQVPYRTT
VARTSSTNSVPTTPTTLVAPSTPLSEAMPSSEPDSTTNNGTPVSRKRLVQEATSTSETVT
TSTLEDVPPEKRTRDDTLEEPILEMVVEVANGVVEESREVELDKDNGHLNGSNGLEASEK
HMEVPQSV
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggcggcgtcggtaacagacagaacgccgcatctgggtgtctcgcagcccatctcaaca
ttgaggccggatcaaaaggatatagttatgacggatcaattgattgcaactttgaaaaag
ttcaacagttatgaaccgaaagaggaaacggagaaaaggatggaagtacttcgcagtttg
aaccgtctcgtcaaagaatgggtgaagaaagtaaccgcaatcaagataccgagtggcgaa
ggagcgaatgctggtggtaaactgttcactttcggttcatatcgtctgggagtacacagt
tctggtgctgatatcgatacgctcgcagttgttccacgccacattgatcgcacagatttt
ttcacttccttcaaagaaatgctgcgccaagacccaaatgtgacggagttgcatggtgtt
gaagaggctttcgtgccagtaatgaagttaaaatactccggcgttgagcttgatattttg
ttcgcgcgactcgctcttaaagaagttccggacactcaagatcttttcgatgatcagctt
ctcagaaacttggatcaggaaagtgtcagatctctgaacggatgtcgcgtcgccgaactg
ttgctaaaacttgttccccgccagaaagaattttgcatagcgcttcgagccatcaaactc
tgggcaaagaatcacggaatttattcaaattcaatgggtttttttggaggtattagctgg
gctattcttgttgcccgagcttgccagttatatcctaatgcaagtgcatctcgaatcgtt
caccgaatgttcttcattttctccacatggacttggccacatccagttcttctaagcgca
ctagatcaagacagaaatgacattcccacgctttgtgatttgatttgggatcctcgtaag
aaaaactctgatagatttcacttgatgcccataatcactccggcctttccggaacagaat
tccacacacaacgttacacgatccacttgtcacatcatcagaaacgaaatttgtgaaggg
ttggaaatctgcaaagatatcacagagggaaaggctacgtgggaggacctattcaaggag
gtcaaattcttcagccggtacaagcattatattggtatgtttttttttctgaattgtgat
cacaatttatcagcttatttaagctctgatcatggctacatccacagaagaagaggaatt
gaactatggcggtttctcgagtctcgtattcgactcctcgtgcaaagtctcgagcgtaac
caagacattctcattgctcacaacgacaccaacaaacacagaccatcaccgaacgctaag
tttgatgtgagaccagaaaacaccagaattaccatttggttcatcggactcgaatttgct
gaacacgccacgaatcttgatttgacatctgagattcaacgattcagaacaaacgtggag
ttgcaagctagtggtgtgaagggcatcggaccaaactcccaagtagagattgacatgttc
tacatgaagaggaccagattgttcagtattatcggtgctgctgctctcaaaaaaggtcgt
gattggaaaccgccgaaaaatcccccaccaccgatgggccaagtgccttatagaacaact
gttgcgagaacttccagtactaattcggtcccaacgacgccaacgactctagttgctccg
agcacaccgctctctgaggcaatgccttcttccgagcctgattcaacaacgaataacgga
acccctgtgagccgcaaacgtcttgttcaagaagcaacatcgacttcggaaacagtgact
acttccaccttagaagatgttccaccagagaagagaacccgtgatgacactctcgaagag
ccaattcttgagatggtggtggaggtagcaaatggagtcgtcgaagagagtagagaagtc
gaattggacaaggataacggacacttgaatgggagcaatgggttggaggctagtgagaaa
catatggaggtgccacaaagtgtttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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