KEGG   Caenorhabditis briggsae (nematode): CBG_18197
Entry
CBG_18197         CDS       T01054                                 
Symbol
Cbr-rpb-2
Name
(RefSeq) Protein CBR-RPB-2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03020  RNA polymerase
cbr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBG_18197 (Cbr-rpb-2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBG_18197 (Cbr-rpb-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_18197 (Cbr-rpb-2)
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_18197 (Cbr-rpb-2)
Enzymes [BR:cbr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CBG_18197 (Cbr-rpb-2)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CBG_18197 (Cbr-rpb-2)
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CBG_18197 (Cbr-rpb-2)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 DUF5816 Zn_Tnp_IS1595
Other DBs
NCBI-GeneID: 8584219
NCBI-ProteinID: XP_045096412
Position
III:complement(5695864..5699901)
AA seq 1215 aa
MNYNNKMAFDEDDGMQDDGNDEEYSDETAEISPDAWQEACWVVISAYFDEKVNFGFFLIK
TICMFQGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGNDMENPAKFSLKFNQI
YLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDESVNEKVYEKVFVGKV
PVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKD
GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIV
FRALGFVSDRDILGHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTR
EQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKR
LDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGN
WGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPA
ETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGA
WVGIHREPELLMDTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEKQK
LALRKRHIDLLKDVDETKKYTWSDLVGNGVVELIDSMEEETSMIAMMPEDLRSGGYCDTY
THCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYY
PQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRS
YRDNEANIDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVAL
PDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGD
KFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANK
GEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKH
MVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDP
YHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMV
KPQGPKRSAKQHSEA
NT seq 3648 nt   +upstreamnt  +downstreamnt
atgaactacaataataaaatggcgtttgacgaggatgacggtatgcaagatgatggaaac
gacgaagagtattcggatgagacggccgaaatcagtccggatgcgtggcaagaagcatgc
tgggttgtgatcagtgcttacttcgatgagaaggtaaacttcggattctttctgatcaaa
actatttgcatgtttcagggtctcgtgcgacagcagcttgattcctttgacgaattcgtt
caaatgaacgtacaaagaatcgttgaagattctccaccagtcgaacttcaatcggaaaac
cagcatcttggcaacgacatggaaaatcccgccaaattctctttgaaattcaaccaaatc
tatctatcaaaaccaactcactgggaaaaagatggagctccaatgccaatgatgccaaac
gaagcacgtctccgtaatctaacatacgcatcaccactttacgtcgatatcaccaaagta
gtgacgcgagacgaatcagtgaacgagaaggtctacgagaaagtattcgtcggaaaagtt
ccagttatgctccgatccagttattgcatgttatcgaacatgacagatcgtgatctaaca
gagcttaacgaatgtccacttgatcctggaggttattttgttatcaacggttcggaaaaa
gtgcttatcgctcaagagaaaatggctacaaatacagtttacgtattctcaatgaaagac
ggaaagtatgcgttcaaaactgagtgccggtcttgtttggaaaattcgtcccgtccgaca
tctacaatgtgggttaacatgctcgctaggggaggtggaggaggaaagaagacggcaatg
ggacagcgaatcatcggtattttgccttatatcaaacaagaaatccctatcatgattgtc
ttccgtgctttgggattcgtttcggatcgtgatattctgggccatattatctatgacttc
gaagacccagaaatgatggaaatggtcaagccttctttggacgaagcatttgttattcag
gaacaaaatgttgctcttaatttcatcggagctcgtggtgccaaaccaggagtcactaga
gaacagagaattaagtacgctcgagaaattcttcagaaggaattattgcctcacgttgga
gtttccgaacattgcgaaactaagaaagcgtttttcatcggatatatggtgcacagactt
cttttggccgcacttggtcgtcgtgaactcgatgatcgtgatcatattggaaacaaaaga
cttgacttagctggacctctgcttgctttccttttccgtgcgcttttccggaatttgttg
aaagagatgagaatgacggctcaaaagtatatcaacaagaacgacgatttcgctctcgat
gtttgtgtcaaaacttctaccatcactcgtggactcgcctattctttggctaccggaaac
tggggagatcagaagaaagcccatcagtctcgcgctggtgtctctcaagtactcaatcgg
ctcacctacactgctacgctttctcatttgcgtcgtgcgaactctcccatcggtcgtgaa
ggaaagcttgctaaacctcgtcaattgcacaacactcaatggggaatggtctgtcctgct
gagactccagaaggacaggctgtcggcttggtgaaaaatctcgcactcatggcctatatt
tctgttggttctcttcccgaaccgattttggaattcttggaggaatggtctatggaaaat
ctcgaagaagtatctccatctgcaatcgcggacgctacaaagatctttgtgaatggtgca
tgggtgggaatccatcgtgaacctgagcttttgatggatacattgaaaaaattacgtcgt
caaatggatattatcgtttccgaagtatcgatggttcgcgacatccgagaccgagaaatt
cgaatctatacagatgctggaagagtttgtcgtccactgctcatcgttgagaagcaaaaa
ctagcattgagaaaaagacacatagatctgttgaaagatgtagatgaaacgaagaagtac
acatggtctgatctggtgggtaatggagtagtagaactgattgattcgatggaagaagaa
acatcaatgatcgccatgatgccagaagatttgagaagtggtggatattgtgatacgtac
actcattgtgaaatccatccagctatgattcttggtgtgtgcgcatcaatcattccattc
ccggatcacaatcaatctcctcgtaacacctaccagagcgctatgggtaaacaagctatg
ggagtttacacaacaaacttccatgttcgaatggacacactcgcacacgttctctactat
cctcagaagccacttgtcacaaccagatcaatggaatatctgagattcaacgaacttcct
gctggaatcaacgctatcgttgcaatcctctcttattctggatacaatcaggaagattcc
gtcattatgaacaactcggctatcgacagaggactcttccgctccgttttctatcgttca
taccgtgataacgaagcaaacattgacaacgccaacgaagaactcatcgagaaaccaact
cgcgagaagtgttctggcatgagacattctctgtacgataaactcgacgaagacggaatc
atctcaccgggaatgcgtgtttctggagatgatgtgattatcggaaagactgttgctctg
ccagatattgacgatgatttggatgcgaccggaaagaaatacccgaagagagatgcttcc
acatttttgagaagttcagagactggaattgtcgatcaggttatgctctcgctcaacaac
gatggtaacaagttcgtgaaaattcgaatgcgttcagtccgacttccacaaattggagac
aagtttgcctctcgtcacggacagaagggtactatgggaatcatgtatcgccaggaagat
atgcctttcactgctgaaggtcttactccggacatcatcattaatcctcacgcagttcca
tctcgtatgacaattggtcacttgatcgaatgcttacagggtaagctttcggctaacaaa
ggagaaattggtgatgcaacaccgttcaatgacacagttaacgtacaaaagatctctgga
cttctttgtgagtacggctatcatctccgtggtaacgaagtgatgtacaacggccatact
ggaaagaagttgacaactcaaatcttcttcggtccaacatactatcaacgtctcaagcat
atggtcgacgacaagattcactcgcgtgcacgtggtccaattcagatgatgaaccgtcaa
cctatggaaggaagagctcgtgatggaggtcttcgtttcggagagatggagcgcgattgt
caaatttcccacggagccactcaattccttcgagaacgtctcttcgaagtttctgatcca
taccacgtgtatgtgtgtaacaactgcggtctgatcgtcgtcgctaacttgagaacgaac
agtttcgagtgcaaggcttgtcgtaacaaaacacaagtgtcagcagttcgtattccttat
gcttgcaagctgctcttccaagaactgatgtcaatgtcgattgctccgaggcttatggtg
aagccacaggggcccaagcgatccgcaaagcaacactcagaagcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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