KEGG   Caenorhabditis briggsae (nematode): CBG_04195
Entry
CBG_04195         CDS       T01054                                 
Symbol
Cbr-rpb-7
Name
(RefSeq) Protein CBR-RPB-7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03020  RNA polymerase
cbr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBG_04195 (Cbr-rpb-7)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBG_04195 (Cbr-rpb-7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_04195 (Cbr-rpb-7)
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_04195 (Cbr-rpb-7)
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_04195 (Cbr-rpb-7)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CBG_04195 (Cbr-rpb-7)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CBG_04195 (Cbr-rpb-7)
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CBG_04195 (Cbr-rpb-7)
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 8581557
NCBI-ProteinID: XP_045092609
Position
I:4097128..4097652
AA seq 174 aa
MFFHLSLDHEVCLHPKYFGPNLNETIKAKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ
PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFD
PNSEKPCYKTNDEATVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLGLCPAE
NT seq 525 nt   +upstreamnt  +downstreamnt
atgttcttccacttgtcactggaccatgaagtctgtcttcacccaaaatacttcggtccc
aacttgaatgagactatcaaggcgaaacttttcaacgaagtcgaagggacttgcacagga
aagtatggatttgtcatcgctgtcactacaatcgacacaatcggacacggcctcatccaa
ccaggacgtggattcgttatttatccagtacgatacaaagctatcgttttccgtccgttc
aaaggacaggttgtggatggtgtcgttacgcaagtcaacaaggttggaatcttctgcgac
attggtccgctctcatgcttcatcagtcgtcattgtattccaccggacatggagttcgat
ccaaacagcgagaaaccgtgctacaagactaatgacgaagccacagtcatccggaatgac
gatgaaatccgcgtgaagctgatcggaacccgtgttgatgctaacgacatcttcgcgatc
ggtacactcatggacgatttcttgggactgtgcccagcggaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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