KEGG   Caenorhabditis briggsae (nematode): CBG_18189
Entry
CBG_18189         CDS       T01054                                 
Symbol
Cbr-rpb-8
Name
(RefSeq) Protein CBR-RPB-8
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03020  RNA polymerase
cbr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBG_18189 (Cbr-rpb-8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBG_18189 (Cbr-rpb-8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_18189 (Cbr-rpb-8)
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_18189 (Cbr-rpb-8)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CBG_18189 (Cbr-rpb-8)
  RNA polymerase III system
   RNA polymerase III
     CBG_18189 (Cbr-rpb-8)
  RNA polymerase I system
   RNA polymerase I
     CBG_18189 (Cbr-rpb-8)
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CBG_18189 (Cbr-rpb-8)
SSDB
Motif
Pfam: RNA_pol_Rpb8
Other DBs
NCBI-GeneID: 8584211
NCBI-ProteinID: XP_002642215
UniProt: A8XT81
Position
III:5724220..5724763
AA seq 148 aa
MAGIIFDDMFSVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVL
ATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSGTDGGQLAAYASFGGLL
MRLKGEAINLHGFEVDMNLYLLMKKTDF
NT seq 447 nt   +upstreamnt  +downstreamnt
atggctggcatcattttcgatgacatgttcagcgttaaaagcgtcgatccagatggcaaa
aagttcgatagggtgtcccgatacttttgtgatgcagagtcattcaaaatggaactcatc
atcgatatcaactcacaaatctacccgttgaagcaaaatgacaaattccgacttgtccta
gctactacacttcgggaagacggacttgccgacgagggagaatatgacccaaaggccgag
taccctcgtatcaagcagtatgagtacgtgatgtatggaaaagtttaccgactggaagat
gatgacagtggaactgacggcggacaactcgcagcctatgcttcatttggcggtcttctc
atgcgtctcaaaggagaagcaatcaacttgcacgggttcgaagtggatatgaatctatat
ttactgatgaaaaaaaccgatttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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